Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00819 ATGGATACCAAAGGCCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTCGTTCTAATCAATGCTGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTGAGCGGGCAAATTTGTCAGATCTGTGGGGATGAGGTAGAAGTCACCGTTGATGGAGAGCCATTTGTTGCGTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACTAGATACAAGCGTCTCAAAGGTAGTCCTCGGGTTGAAGGCGATGAAGAAGAAGATGATATTGATGATCTTGAGAATGAGTTTGACATTGCAAACAAGGATCCCAACAGTTTATCTGAGGCAATGCTCTATCCTCACCTCGCTGTCGGTCGTGGTTCTCACGCTAATGGTTATGGAAATACGGGTTCCGACCTCGACTCATCCGTTCCGACTGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCACGCTCTAATTATTCCTCCTTTTATTAGCCGTGGGAAAAAGGTCCATCCAGTGCCATTCACTGATTCTCCCATGTCCGCCAATCCAAGGCCTATGGATCCGAAAAAGGATTTAGCTGTGTACGGATATGGAACTGTTGCATGGAAGGAACGAATGGAGGACTGGCGGAAGAAACAAAATGAAAGGCTTCAAGTGATTAAGCATGAAGGTGGAGGTGGAAAAGGCGACGACGAGTTCGACGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCACTTTCTCGAAAACTGCCTATCTCCTCGAGCAAGATAAATCCATACAGAATGATAATTGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTATCCTCCACCCTGTCTACGAGGCGTATGGTCTGTGGTTAACATCAGTAATATGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTTCCGAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGTTATCGTTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATTTACGTCAGTACGGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCGAACACCGTCCTGTCTATCCTTGCTGTTGATTATCCGGTAGACAAGGTTTCATGCTACGTTTCAGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGAGCCCCAGAGTGGTATTTTGCCCTGAAGGTCGACTATCTGAAAAACAAAGTTGATCCGACATTCGTCAGGGAACGACGTGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTGCCATGGCTCAAAAAGTTCCGGAAGATGGATGGACAATGCAGGATGGAACTCCATGGCCCGGGAACAACGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTTGGTCAAAATGGGGTTCGTGACTTGGAGGGAAATGAATTACCTCGTCTTGTATATGTATCTCGTGAGAAGAGGCCGGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTGCGTGTCTCGGCAATCATCTCCAACGCTCCATACATTTTGAATGTCGATTGTGATCACTACATCAACAACAGCAAGGCACTTAGAGAAGCTATGTGCTTCATGATGGACCCAATTTCTGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCATGATCGATACTCAAATCGCAACGTTGTATTCTTCGATATCAACATGAAAGGATTAGATGGCATTCAGGGGCCGATTTATGTCGGAACTGGGTGTGTCTTCAGGAGGCAAGCTCTTTATGGGTATGATGCCCCTGCCAAGAAGAAAGCACCAAGAAGGACTTGTAATTGTCTGCCAAAATGGTGCTGCTGTTGCTGTGGAACTAGAAAGAAGACTAAACCAAAGACCAGTGATAAAAAGAAGTTAAAGACCAAAGATACGTCGAAGCAGATTCACGCACTCGAAAATATCGAGGAAGGTATTGAAGGAATAGATAATGAGAAATCATCACTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACCCTTATGGAAGACGGTGGCGTGCCTGGAGGCGGGACATCTGCTTCGTTGTTGAAAGAAGCCATCCACGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATCTATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGTCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCCGATCGTCTACACCAAGTTCTTCGGTGGGCTCTTGGATCTGTCGAAATTCTTTTAAGCAGGCACTGTCCAATATGGTATGGATATGGATGTGGTTTGAAATGGCTCGAGCGTTTCTCGTACATAAACTCCGTTGTTTATCCATTGACATCGATTCCATTGATCGCTTATTGTACCCTGCCCGCTGTCTGTCTGCTTACTGGGCAATTTATCGTCCCTGAGCTAAGCAACTATGCGAGTATCATTTTCATGGCCCTTTTCATATCTATAGCAGCAACCGGTATACTAGAAATGCAGTGGGGAGGTGTTGGGATTCACGATTGGTGGAGAAACGAGCAGTTCTGGGTTATCGGTGGTGCATCGTCCCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTTAACACAAATTTCACGGTCACGTCGAAGGGAGGAGACGATGGGGAGTTTTCGGAGCTTTACCTCTTCAAATGGACATCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATCATCGGAGTAGTCGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGCCCGCTCATCGGTAAGCTTTTCTTTGCATTCTGGGTTATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTGTGGTCAATTCTTCTATCATCCATCCTGTCACTTTTATGGGTCCGAATCAACCCGTTCCTCGACAAGGGTGGCATTGTATTGGAAGTCTGTGGGTTAAACTGTGACGACTAA 3270 45.05 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEVEVTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNSLSEAMLYPHLAVGRGSHANGYGNTGSDLDSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPVPFTDSPMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDEFDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRILHPVYEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFALKVDYLKNKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRKKTKPKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFSELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5984072 5990361 - Carg27554-RA Car01g00819 141683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00819 1089 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Car01g00819 1089 Pfam Cellulose synthase 362 1076 IPR005150 GO:0016020|GO:0016760|GO:0030244
Car01g00819 1089 Coils Coil 99 119 - -
Car01g00819 1089 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00819 Car-Chr1:5984072 Car03g00961 Car-Chr3:7453357 0 dispersed
Car01g00819 Car-Chr1:5984072 Car09g01056 Car-Chr9:9352842 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00819 K10999 - csv:101214061 2114.35