Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00826 ATGGCCGCCCTTCACCAAACCGCCGCTTCTCTCCAGGCCAAGCTCCTTCCAACCATTCGAATCTCCCGAACCACACCTGCAAACCTCTCCTTCTCCGCTACTTTTCCTTCTCGCCGACTCCGCCTCGGCCACCTCCGCTCTCACGCCGCCACTAAAATGTCCACCAGTGCCGCCGGGAGCTACGCTGCTGCGCTCGCGGAAGTCGCCGCCTCAAACGACACGCTCGAGGTCACAAGCGCGGATGTGGAGAAAATCGAGAGCGTGTTCGCGGATCCGCAGTTGTTCGATTTCTTCGCGAATCCGACGATTAAGGTCGAGAGGAAACTGGAGGTGGTTGATGAGATCGCTTCGTCGTTGTCTCTACAGCCGCATACGGAAAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCGTGAAGGAGATCGTGACGGAGTTCGAAACAGTGTACAACAAATTGACGAACACGGAACTTGCGGTGGTGAGTTCGGTTGTGGAATTGGAGGAGCAGCATTTGACGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATCAAGACGCAGATTGATCCAAGTCTTGTGGCTGGATTCACTGTGAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTTAAGAAGCAGCTTGAGGAAATCGCTACTCAGCTTGATCTCGGCAACATTCAACTGACGGTATAA 723 53.25 MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGSYAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLSLQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6278106 6278828 - Carg27789-RA Car01g00826 141690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00826 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986|GO:0016020|GO:0046933
Car01g00826 240 PANTHER BNACNNG66500D PROTEIN 26 239 - -
Car01g00826 240 PANTHER ATP SYNTHASE DELTA CHAIN 26 239 IPR000711 GO:0015986|GO:0046933
Car01g00826 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986|GO:0046933
Car01g00826 240 Gene3D - 57 150 IPR026015 -
Car01g00826 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986|GO:0046933
Car01g00826 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986|GO:0046933
Car01g00826 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986|GO:0046933
Car01g00826 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986|GO:0046933
Car01g00826 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986|GO:0046933
Car01g00826 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986|GO:0046933
Car01g00826 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 55 157 IPR026015 -
Car01g00826 240 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 58 231 IPR000711 GO:0015986|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00826 Car09g01095 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00826 Car-Chr1:6278106 Car14g00911 Car-Chr14:5459842 2.37E-14 dispersed
Car06g00841 Car-Chr6:6615363 Car01g00826 Car-Chr1:6278106 2.58E-19 transposed
Car01g00826 Car-Chr1:6278106 Car09g01095 Car-Chr9:11115955 6.34E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00826 K02113 - csv:101211740 365.155