Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00838 ATGGATCCGGAAGATAGTTTGTGTAGTTCTGAAGTTTGGACAAAATCTTCATCGTTTCCTAATATTGATGCCCAGCAACCTGAACAGAAATGGGTAGATACTTCCATTTTAGACTATGCTATGGACCAGCCCTTTCAAGAATATGAAGAACAGACTGAATCGAAGGCATCCTTAACGCGTAACTCGGATCAACAAATTGGAATCCTGAATAAAGATAGTGATCAGATGAATGCAGCAATTCTAGGCAGTAAGGTTCAAGATTGGGACCCAAGAGCGATGCTAAGTAATCTGTCTTTTCTTGAGCAGAAGGTTCATCAGCTTCAGGAACTTGTGCATTTGATCATTGGCCGGAGGAGCCAAGTGTTGGGGAGGCCAGATGAAGTCGTAGTTCAGCAACAGCAGCTGATAACTGCTGATCTAACTTCAATTATTGTTCAGTTAATCTCAACAGCAGGCAGTCTGCTTCCTTCTGTGAAGCATAACTTTTCTGCAGCTGTTCCTCTGGTCGGGCAGCTGGAGCCGCCACTCGACAGGGTTCTTTTTGCATCTGAATCTGGGACGAATAATGGCGTTGTTCAGTCGCAACATGGTGATGGAACTAAACTTCCCGAGGTTCCAACCCAAGTAGACGAGAGTAGCAAGTATGGGAAGGAACGGATTGAAGAACACGAATCGAAGGATGAAGAAGACGCAGACGAAAGCGAGAACCTCCCCCCAGGTTCATATGAAATATTGCAACTAGAAAAAGAAGAGATCCTAGCACCTCACACTCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCATATGAGGGGTCACGGTGACGAATACAAAACCGCTGCTGCTCTTGCAAAGCCGAACAAAGAAGCGAGTTATGAGACGATGCTGATTAAGAGGTACTCGTGCCCCTTCACCGGGTGCAAACGGAACAAGGATCATAAGAAGTTTCAGCCTCTAAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCCAAGAAGTTCTCAGTAATTGCTGATCTCAAAACACACGAAAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTGTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGAAGAATCCAAGGGAACAGCCATGTCCTGTGATCGAGGAGAACGCTACGAAACAGCGAATAAGCTCGGGAGTATAAATTTCAGTTTCGGGTCGATTGCTTCGGGAGGAAGTTCAGTTGAAACCATAGCAGCAGCAGATGCAAAAGGTGGTGTTGATGATCCTCTTACATATTTCTCGCCATTGAACTTCGATCCGTGTAATTTTGGTGGCTATCACGAGTTTCCTCGACCACCATTCGAGAACGCAGAGAATGCGTTTTCGTTCCTTATCCCGACATCTAGCAATTACAACCAAAAATCTGGCGCAGAGTCGAGCTGTAATAACCTTGAATGA 1542 44.75 MDPEDSLCSSEVWTKSSSFPNIDAQQPEQKWVDTSILDYAMDQPFQEYEEQTESKASLTRNSDQQIGILNKDSDQMNAAILGSKVQDWDPRAMLSNLSFLEQKVHQLQELVHLIIGRRSQVLGRPDEVVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNFSAAVPLVGQLEPPLDRVLFASESGTNNGVVQSQHGDGTKLPEVPTQVDESSKYGKERIEEHESKDEEDADESENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEASYETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEESKGTAMSCDRGERYETANKLGSINFSFGSIASGGSSVETIAAADAKGGVDDPLTYFSPLNFDPCNFGGYHEFPRPPFENAENAFSFLIPTSSNYNQKSGAESSCNNLE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6606177 6607718 + Carg27968-RA Car01g00838 141702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00838 513 MobiDBLite consensus disorder prediction 188 239 - -
Car01g00838 513 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Car01g00838 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00838 Car-Chr1:6606177 Car12g00907 Car-Chr12:9003008 0 dispersed
Car01g00838 Car-Chr1:6606177 Car07g00486 Car-Chr7:2426305 8.88E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2845 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00838 - - cmax:111471438 996.497