Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00839 ATGGGTGGAGTTTGTTCAAGAACAAGAACCACTTCTGATGATGTTGGTAGCAGTAACGGTGGTGGAGGGGTTGGTGATTCTAACAATGAGTTGGGCATGGTTCATCATACTTATGGACTGCCCTCCAAAATTAGTGATTCCACCCCTGCTGTTGCTGTTGCTGATTCCATGAATAAGGCGTTACGAGAACCATTTTCGTTCCCGGAGGTGAATGCGGTGGTTCCATATGGATTGGACGATATCAACGATGGAATTCCTCGCTTATCTCGAACGTTATCTCAGAAATCTAGATCAACCAAGTCGAGACAAGCTGTTGCAAAGGTTTCAGAAATGAGCTCTCTTCTAGGCAGAGCTGGTACTGTTGGGCTAGGAAAGGCTGTTGATGTTTTGGATACACTTGGTAGTAGTGTGACAAGTTTGAACCTCGGTGGTGGTTTCACCTCAGGGGTGACAACAAAAGGGAACAAAATTTTAATCTTAGCTTTTGAAGTTGCCAACACCATTGTGAAGGGTTCTAGTCTAATGCAGTCGCTCTCGAAACGTAACATCAAAGTCTTGAAGGAGGAAGTGCTTCCATCAGAAGGGGTCCAAAATTTAATATCAAGAGACATGGATGAACTCTTGAGAATTGCAGCAGCAGACAAGAGAGAAGAACTGAAAGTTTTCACTTGTGAAGTGATTCGCTTCGGAAATCGTTGTAAAGATCCTCAATGGCATAATTTGCATCGCTATTTTGATAAGTTAGGTTCAGAAGTTACACCACAAAAGCAATTGAAGGAAGATGCTGAGGCAGTGATGCAGCAGTTGATGACATTTGTACAGTACACAGCAGAACTTTATCATGAGTTACAAGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAAGAGGAGGATAGTTCGAACACGACGCAAAGAGGAGATAGCATTTCGATCTTAAAGGCGGAGTTAAAGAACCAAAAGAAGCATGTCAGAGGTTTGAAGAAGAGATCTCTCTGGTCCAGGATTCTCGAAGAGGTACCAAGTTCTGTTGTTTATACCTCGTCATACCGTGTGATGGAGAAGCTTGTGGACATAGTGCATTACTTATATTTGGAGATTCATGAAGCCTTCGGTAGTGCCGATGATGAAAAACCAGCCAAAGGTTCTCAGAATAGCCACAAAAAGTTAGGGACGGCTGGTCTCGCTTTGCATTATGCAAATATCGTTAGTCAAATCGATACACTTGTATCTCGTTCGAGTTCCGTACCTCCTAACACAAGGGATGCTTTATATCACGGACTACCTCCCAGTATAAAGTCGGCTTTACGCTTAAAACTACAGACGTTTCAGCCGAAAGAAGAGCTTACAATTCCTCAAATCAAAGCCGAGATGGAGAAAACTTTGCATTGGCTTGTTCCCATTGCCAATAACACTACCAAGGCTCATCACGGTTTCGGTTGGGTTGGAGAATGGGCGAATTCCGGAGCCGAAACAAACCGAAAGCCTTCTGGCCAGAGCGAGTTACTAAGGATCGAGACGCTCTATCATGCAGATAAAGAAAAAACGGAGTCCTACATCCTTGAACTGGTGTTATGGCTTCACCATCTGATCAGCCAAGCTAGAGCTTGTAATACTGGAATAAGGTCTCCTGTTAAATCACCAATTAGATCTCCAAACCAACGAACGATTCATTTATCGAACCAGAAACCAAATTCTCCATCCTCGACGTTGACGGTAGAAGACCAGGAAATGCTTCAATATGTGAGCAAAAGGAAACTTACCCCGGGAATAAGTAAGAGTCAGGAATTTGATTCAGCAAAAACCAGGTTAAGTAAGTACCATAGGCTAAGTAAAAGCAGCAACCATTCCCCAACCAATGAAACCAAGAAGGATCCGTCCACCCTTCGGAGGCCGAACTCCATCCCGATTATTGATTTTGACATCGACCGTATGAAAGCTTTGGATGTCATCGATAGAGTCGATAATATTGGAAGCTTTTCATAA 1992 43.32 MGGVCSRTRTTSDDVGSSNGGGGVGDSNNELGMVHHTYGLPSKISDSTPAVAVADSMNKALREPFSFPEVNAVVPYGLDDINDGIPRLSRTLSQKSRSTKSRQAVAKVSEMSSLLGRAGTVGLGKAVDVLDTLGSSVTSLNLGGGFTSGVTTKGNKILILAFEVANTIVKGSSLMQSLSKRNIKVLKEEVLPSEGVQNLISRDMDELLRIAAADKREELKVFTCEVIRFGNRCKDPQWHNLHRYFDKLGSEVTPQKQLKEDAEAVMQQLMTFVQYTAELYHELQALDRFEQDYRRKLQEEDSSNTTQRGDSISILKAELKNQKKHVRGLKKRSLWSRILEEVPSSVVYTSSYRVMEKLVDIVHYLYLEIHEAFGSADDEKPAKGSQNSHKKLGTAGLALHYANIVSQIDTLVSRSSSVPPNTRDALYHGLPPSIKSALRLKLQTFQPKEELTIPQIKAEMEKTLHWLVPIANNTTKAHHGFGWVGEWANSGAETNRKPSGQSELLRIETLYHADKEKTESYILELVLWLHHLISQARACNTGIRSPVKSPIRSPNQRTIHLSNQKPNSPSSTLTVEDQEMLQYVSKRKLTPGISKSQEFDSAKTRLSKYHRLSKSSNHSPTNETKKDPSTLRRPNSIPIIDFDIDRMKALDVIDRVDNIGSFS 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6622367 6626041 - Carg27969-RA Car01g00839 141703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00839 663 MobiDBLite consensus disorder prediction 543 573 - -
Car01g00839 663 MobiDBLite consensus disorder prediction 1 25 - -
Car01g00839 663 MobiDBLite consensus disorder prediction 610 635 - -
Car01g00839 663 Pfam Domain of unknown function (DUF3475) 159 215 IPR021864 GO:0045927
Car01g00839 663 MobiDBLite consensus disorder prediction 1 32 - -
Car01g00839 663 Pfam Protein of unknown function (DUF668) 392 476 IPR007700 GO:0045927
Car01g00839 663 Coils Coil 312 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00839 - - - csv:101220504 1118.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00839 Car-Chr1:6622367 Car12g00908 Car-Chr12:9009012 0 dispersed
Car01g00839 Car-Chr1:6622367 Car05g00258 Car-Chr5:1434807 2.22E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1271 Blo01g01757 Blo12g00764 . Bda03g00418 Bpe02g00185 Bpe04g00383 Bma04g00394 Bma01g02540 . . . Cma09g01148 Car01g00839 . . Cpe06g00928 . . . . . . . . Cla08g00750 Cam08g1177 Cec08g0767 Cco08g0875 Clacu08g0883 . Cre08g0685 . . . . . . . . . . . . . . . . Sed07g2813 . Cmo09g01241 . . . . . Cpe02g00923 Bhi09g01580 Tan01g3004 Cmetu01g2180 . . . . Cla09g00971 Cam09g1023 Cec09g1026 Cco09g1037 . . Cre09g0988 . . . Cme01g00726
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004658 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00839 Car_Chr01 FPKM 0.434343 0.277617 0.116411 0.220304 9.244181 7.14683 9.990604 0.045081 0.038205 0.0