Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00848 ATGTCGATGCTCAACTCCTTCTTCAACAGGGGCTTCAAGGCTGCCCAATGTAAAACCCTGCTCAAATTGACAATTCCACGAATTAAGTTGCTGAGGAATCGGAGGGAGATTCAACTTAAGCAGATGCGCCGAGACATAGCTAAGCTTCTTGAGACGGGTCAAGAAGCTACGGCTCGCATTCGGGTAGAGCATATAATCAGAGAAGAGAATATGATGGCTGCTCAGGAAATTCTTGAGTTGTTTTGTGAGCTTATTGTTGTTCGTCTCCCAATTATTGAAACACAAAGGGAATGTCCTCTAGACTTGAAAGAAGCAATCTCAAGTGTGTGTTTTGCTGCTCCAAGGTGTGCAGATCTAACAGAGCTTCTCCAGGTTCAGTTGCTTTTTGCAGCTAAATATGGGAAGGAATTTGTATCAGCTGCAACTGAGCTCATGCCTAACTGTGGTGTTAACCGTCAGTTGATCGAGTTGCTTTCTGTTCGTGCTCCTTCACCTGAAAAGAAACTGAAGCTCTTAAAGGAAATCGCTGAAGAACATGACTTAGATTGGGATCCTGCTGGAACTGAAGCTGAGTTTAACAAATCTCCAGAAGATTTGCTCAATGGATCAGCGCAGTTTGTCAGTGCGTCGAAATTAGCCCTTCCTAAAGATAAACACGACGAGACATATAGTGCTACTCCTGATTTGGGTAGTGCTCCACAACCTGATTCTGATTCTGAATTGGACACGTTAGACTTTCCTGAAGTTCCAAAGATATCAGTATCTCTGCATCCTCCTACTACTTTTGATGCTGCCACTGCACAACCACTGATTCCACCTCCATCTGTATCCCCACCACCTGAAACTGATCGTGATTCATTCAAATCTTCTGGTATTATTCCTGAAATCCCACCTCAAGATTTACACTTGAAACGTGAGGAGGTGAGATCTGTTTCACCCAGCAACGATCATCTGAATGTCTCTGTTGGCGAAGATAAACAGTTTTTGCCATTTATTACTCCGCCATCACTGTCATCTTCGTTTTCTCATAGACAAACTGATGTGTGCCCATCCTCTGATTCAAAGACCCCTGAGGAGAAGTTTGGTTTCAAACCACGGTTTGAACAAGAGATAAATTCACCACCACCCTCTGTTTCAAGGACCCATGAGGAGACAAATTCACTATCACCTTCTGTTTCAAGGACCCATGAGGAGACAAATTCACTACGTCCCTCTGTTTCTCCTGAAGAAAAATTCGGTTTCAAACCACAGTTTGAGCAGAATCTAGATTCCCCACCACCCTCTGTTTCAAGGACAAAGAGTGAGGTCAATGTGGATGTCAGTGTGGATTTGCAGGATGTGTTGGCAGCTGCTCAGGCTGCTGCTGAAACTGCTGAACGTGCTGCTGCGGCTGCTCGCTCTGCAGCCAGTCTTGCGAAGGTTAGAATCGATGAGCTCACAAAGAAAAAGAATGATCGAGATGCTGAAGTTAGTTGTGAGAATCCATTCCACGGAGCTGCTGTAACTCCACCTGATAAACAAACATTCCAACAAGATTCTTTGGGGAATTATTCTATGCCATATTATTCACAAGATTCTTTCAAAGAACATCACAGGGTAAGCTGTGATTTAGACGTTACTGGTCATCACCAGCTTGAGCCACAGAAATCGGGTTTTGATTCCTCGCCCAGTAATTCACCATCAGAACGCATAGCACATCCTCATCAGACGCAGAGGCTCCCATCGATGGATGACGACCCATACTTTTCATACCCGAATCTATTTACTTCACAGAAACCAAATCTGGGATCTGATCGTTCGTCTGGTGGTGGTTCCGATCTACACATGTGA 1830 44.43 MSMLNSFFNRGFKAAQCKTLLKLTIPRIKLLRNRREIQLKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRCADLTELLQVQLLFAAKYGKEFVSAATELMPNCGVNRQLIELLSVRAPSPEKKLKLLKEIAEEHDLDWDPAGTEAEFNKSPEDLLNGSAQFVSASKLALPKDKHDETYSATPDLGSAPQPDSDSELDTLDFPEVPKISVSLHPPTTFDAATAQPLIPPPSVSPPPETDRDSFKSSGIIPEIPPQDLHLKREEVRSVSPSNDHLNVSVGEDKQFLPFITPPSLSSSFSHRQTDVCPSSDSKTPEEKFGFKPRFEQEINSPPPSVSRTHEETNSLSPSVSRTHEETNSLRPSVSPEEKFGFKPQFEQNLDSPPPSVSRTKSEVNVDVSVDLQDVLAAAQAAAETAERAAAAARSAASLAKVRIDELTKKKNDRDAEVSCENPFHGAAVTPPDKQTFQQDSLGNYSMPYYSQDSFKEHHRVSCDLDVTGHHQLEPQKSGFDSSPSNSPSERIAHPHQTQRLPSMDDDPYFSYPNLFTSQKPNLGSDRSSGGGSDLHM 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6956660 6960988 - Carg26570-RA Car01g00848 141712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00848 609 MobiDBLite consensus disorder prediction 495 514 - -
Car01g00848 609 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Car01g00848 609 MobiDBLite consensus disorder prediction 333 434 - -
Car01g00848 609 Coils Coil 32 59 - -
Car01g00848 609 MobiDBLite consensus disorder prediction 543 609 - -
Car01g00848 609 Coils Coil 448 468 - -
Car01g00848 609 MobiDBLite consensus disorder prediction 217 320 - -
Car01g00848 609 MobiDBLite consensus disorder prediction 372 406 - -
Car01g00848 609 MobiDBLite consensus disorder prediction 333 352 - -
Car01g00848 609 MobiDBLite consensus disorder prediction 547 568 - -
Car01g00848 609 MobiDBLite consensus disorder prediction 584 601 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00848 - - - cmax:111480885 1115.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00848 Car09g01087 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00848 Car-Chr1:6956660 Car09g01087 Car-Chr9:10176064 4.77E-173 dispersed
Car09g01086 Car-Chr9:10168810 Car01g00848 Car-Chr1:6956660 4.01E-06 dispersed
Car10g00564 Car-Chr10:2851482 Car01g00848 Car-Chr1:6956660 8.38E-24 dispersed
Car11g00482 Car-Chr11:2623992 Car01g00848 Car-Chr1:6956660 1.90E-30 dispersed
Car01g00848 Car-Chr1:6956660 Car04g01983 Car-Chr4:14722808 1.54E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00848 Car_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0