Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00860 ATGGCCAAGAAGCGGAAATCCATCGCTACCAGCCTCGACGAGGTAGATCGGACCATGTACGCCTCCTTTTGCAGTGCGGCCAACTCTCTCTCCCAGCTTTATACCCAGGCTATGAACCACCAGAAGCTTTCTTTCCAAGCCGGAGAACGTCACGCCATGGAGAAGCTTTATCAGTGGATGTTTAGACAACAAGAAGGTGGATCTAGAGTGACAACAGCTGATGTACTCAATTACATACGGAATGAGTTGGATTACTGTGGAGAAGAACCGTCGATGTCCCCAAGAGTCGCAGTCCACCAACAACAACAGCATGTTCAACCAACAATGCAGTTTACAAACTCGAGCTTTCCTGCTTCATCAGGTCTTTGTGCGCAAGCAACCACCGGACAAGGAAGTCGAACAGAGCATTCTGATAATCATTCCAAAAGTTCAGTCTTCTCAAACGCACTGTCAAGCCCCATTCGTCGGAGTTTACAACAGTATCACATTGCTCAGGAAGCTCACTACCCGAACAATGGGATGTCGGGAGAAAACGGAGCTCCTCGAAACAACGATCCCAACTTTCTTCAGCACCAGAATGTGGACCCTAATTCAATCAGCTCTAATGACTCATCCATGGACATGCATGCCGACAGTCCTGCACATGACTCACATTGGCGAAGTGTGTGGATATTCAAAAAGCTTGGTCATCATAATTTGAAGAGTCGCACCACAATATAA 720 47.36 MAKKRKSIATSLDEVDRTMYASFCSAANSLSQLYTQAMNHQKLSFQAGERHAMEKLYQWMFRQQEGGSRVTTADVLNYIRNELDYCGEEPSMSPRVAVHQQQQHVQPTMQFTNSSFPASSGLCAQATTGQGSRTEHSDNHSKSSVFSNALSSPIRRSLQQYHIAQEAHYPNNGMSGENGAPRNNDPNFLQHQNVDPNSISSNDSSMDMHADSPAHDSHWRSVWIFKKLGHHNLKSRTTI 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7377878 7391159 + Carg27778-RA Car01g00860 141724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00860 239 MobiDBLite consensus disorder prediction 176 208 - -
Car01g00860 239 MobiDBLite consensus disorder prediction 122 148 - -
Car01g00860 239 MobiDBLite consensus disorder prediction 169 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00860 - - - cmax:111480673 411.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01010 Car-Chr9:6729039 Car01g00860 Car-Chr1:7377878 2.61E-31 transposed
Car01g00860 Car-Chr1:7377878 Car09g01009 Car-Chr9:6718927 5.75E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1340 Blo01g01741 Blo12g00775 . Bda03g00403 Bpe02g00202 Bpe04g00367 . Bma01g02519 . . . . Car01g00860 . . Cpe06g00910 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00863 . . . . . Sed07g2827 . . . . . . . . Bhi09g01539 Tan01g3074 Cmetu01g0774 . . Mch11g1488 . Cla09g00950 Cam09g1001 Cec09g1004 Cco09g1014 . . Cre09g0965 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003826 3 1 2 2 2 1 3 1 2 1 1 1 2 0 1 3 1 3 2 1 1 1 1 1 2 1 1 1 1 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00860 Car_Chr01 FPKM 8.89071 10.240193 14.253139 13.573044 10.965558 9.756694 10.695152 27.629711 31.088383 31.11874