Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00864 ATGAAGAAACCAAATCAGATATTTAGAACAGCAGCCGCAGCAAAAGTAGTAGCTAATCCCATTCATATGTCCGCCATGGATATGGATAGTAAGCTTGATGGGCCATCTACTCCCTCTGGAGGTGTGGACGATGTTTGGAGGGAGAAGGCGGTTGAGGAGATGATGAGATGGGAGGATTTTATTGGAGTGAAAGCGCAGGAGGATATACGGATCTTGAATCCCTTGAATTGTTTCCCCCAATTTGAAGAGGAGATGATTGTCGGGTTTGGGAATGGCGGTGAAATTAGTGGGAGATCGGGGAAGAGAAGGCGCGCCCCCATGGAGCCCATGGATGAGGCTGCCTTGCAAAGACAACGGAGGATGATTAAGAACAGGGAGTCCGCTGCCAGATCCAGAGAAAGGAAACATGCACATCAAGTTGAGTTAGAGTTAATAGCTGCCCGACTTGAGGAAGAGAACCACCGATTATTGAAACAGAAGGCTGAGAGAGGGAAGGAACGACTAAAGCAGTTGATGGAAACAGTGATCCCAGTTGTGGAGAAACGAAGACCGCCGCGAGTCCTATGTCCGGGTCACTCCTTCGAATGCTAG 591 48.9 MKKPNQIFRTAAAAKVVANPIHMSAMDMDSKLDGPSTPSGGVDDVWREKAVEEMMRWEDFIGVKAQEDIRILNPLNCFPQFEEEMIVGFGNGGEISGRSGKRRRAPMEPMDEAALQRQRRMIKNRESAARSRERKHAHQVELELIAARLEEENHRLLKQKAERGKERLKQLMETVIPVVEKRRPPRVLCPGHSFEC 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7437296 7439116 - Carg28260-RA Car01g00864 141728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00864 196 Coils Coil 139 174 - -
Car01g00864 196 Pfam bZIP transcription factor 112 171 IPR004827 GO:0003700|GO:0006355
Car01g00864 196 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 114 166 IPR004827 GO:0003700|GO:0006355
Car01g00864 196 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 119 134 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00864 K14432 ABF; ABA responsive element binding factor - cit:102616186 157.147
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00864 Car15g00550 CCT
Car01g00864 Car04g02360 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00864 Car-Chr1:7437296 Car11g01234 Car-Chr11:10096143 3.46E-20 dispersed
Car01g00864 Car-Chr1:7437296 Car15g00550 Car-Chr15:3026222 3.90E-28 wgd
Car01g00864 Car-Chr1:7437296 Car04g02360 Car-Chr4:18962141 8.77E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1370 Blo01g01730 . . Bda03g00393 Bpe02g00211 Bpe04g00355 Bma04g00371 Bma01g02509 Cmo04g02568 Cmo15g00598 . . Car01g00864 . . . . . . . . . . . . . . . . . . Cone4ag1498 Cone7ag1450 . . . . . . . . Bda11g00872 . . . . . . . . . . Car04g02360 Car15g00550 Cpe01g02120 . . . . . . . . . . . . . . . . . Chy03g00502 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008746 0 0 0 0 0 1 2 1 1 2 2 1 2 1 0 2 1 2 0 1 2 0 2 1 1 2 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2849 PF00170 bZIP_1 3.10E-11 CL0018 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00864 Car_Chr01 FPKM 0.385124 1.133302 0.0 1.217331 0.136309 0.426584 0.662022 1.404708 0.90847 0.899121