Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00873 ATGTCGAGCGACAGCGACGAGGACGAGCTGCTGCAGATGGCTCTCAAGGAACAAGAACAGCGCGATGTCAATTATCTCCCTAATTCTCGCAAGCCCGTTGCTAATTACGTCCAACCGCCGTCTCAGCACCGGAAACCTGCTTCTGCAGCTGCTTCTAAAACCAGTGGCAGTAATGCGCAGCCTAAGGGTGGTCGGACGGTTGTCGACGATGATGACGATTCGGAGGTGGAGATGCTGAGCATTTCCAGTGGCGATGAGGATTCCACGAAAGATCAACGAGCGTCCGCCGGTGGAGGACGCGGTGGTAGGGCGGCTAGGTCCTCTGGAAGGGACGATGATCCGGGCTGGGACGGCGAGGAGCCTCATTGCTGGAAGCATGTTGATGAAGACGAGCTCGCTAGAAGAGTACGTGAAATGCGGGAGACAAGAACAGCTCCCGCTCCCCAGAAGTTCGACCGAAAGGTATCTGCAGTCGGTAGACCGGGACTCAGCAATTTGCCGTCGATGCCTCGTGGTATGGAATATATAGATCCACTTGGGTTGGGAGTAATAGACAGTAAATCATTAAGATTGATCACAGAGGAATCCGAGAATTCTCCTTCTAGGTCTGAGAAAGATTACATTGATGGTACCCTACGAGAGAAATTACTGTATTTATCTGAACGGTTCGATGCGAAGATTTTCATTTCTCGGATACACCAAAACACAAGTGCGGCAGACTTGGAGAAAGGCGCTTTTGCTTTAAAAACTGACCTTAAAGGCCGGACCCAGCAAAGAAAACAATTAGTCAAAAACAATTTTGACTGCTTTGTATCATGCAAGACCACAATTGATGATATTGAGTCGAAGTTGAGACGAATTGAAGAAGATCCTGAAGGTTCTGGAACTTTACATTTGTATAATTGTATTCACGGAGTAAGCAAGCAAGCAAATCGGGCTTTTCAGTCTCTGTTTGAGAGACAGGCACAAGCTGAAAAGATCAGATCAGTCCAAGGAATGCTACAAAGGTTCAGAACGCTTTTTAACTTACCAAGTACCATTCGTAGCAGCATTAGTAAGGGTGAATATGATCTGGCAGTTCGAGAATACAAAAAAGCAAAGTCAATTGCTCTGCCATCTCACGTGGGAATTTTGAAAAAAGTTCTTGAGGAGGTTGAAAAAGTGATGCATGAGTTCAAAGGCACACTTTACAATACAATGGAGGACCCACAAACAGATTTGACAAACCTTGAAAACACCGTGAGACTATTACTGGAGCTGGAGCCTGAATCAGATCCTGTGTGGCATTATTTAAACATACAGAATCACAAGATACGAGGATTACTCGAAAAGTGTACCTTGGATCATGAATCGAGAATGGAAGCATTGAATAATAAGATGCGGGAAAGAGCTTTTGCTGATGCAAGATGGAGGCAGATTCATCAAGATCTGGATCAATCTTCAGATGTTCATCATTCTTCTGCTTTGGATGGCCATCTCCCGTTGGGCGTGAAACCAGTGGAAGTAAATAGTGAAGAAGTTGATGCTCTTAGAGCTAGATATATTCGGAGATTGACTGCTGTACTTATCCACCACATACCAACGTTTTGGAAAACTGCTCTTTCTGTTTTCAGTGGGAAATTTGCCAAGTCCTCTCAAGTTTCTACCGAATTTGCTAACCCATCGGCTAGCAAAAATGAGGACAAGGTTAGTGAGGGTAAGTACTCAAATCATTCTGTGGAGGAAGTTGCTGGGATGCTTCGCAATACACTATCTGCATATGGAGTAAAGGTTCACAGCACCTTTCGTGATCTTGAAGAATCAAATATACTTCAGTCATATATGAGTGATGCCATTACTGAAATATCTAGCGCGTGTGAAGCTTTTGTAGTGAAGGAATCAGCTCCTTCAAGTGCTGTGATTGCACTGCGAACACTTCAATCAGAGGTGACAAAGATTTACATTTTAAGGCTTTGTGCCTGGATGCGAGCCTCCATTGTAAGGATTTCAAAAGAGGAAACATGGGTCCCTGTGTCAATTATCGAGAGGAATAAATCTCCATACACAATCTCCTTCCTGCCACTAGCATTTCGATCTATCATGTCTTCAGCAATGGATCAAATAAATTTTATGGTTCAGTCTTTAGCAAGTGAGGCTTCAAAGTCGAAGGATATATTATTACAACTTCAAGAAATTGAGGAATCTGTTAGACTTGCATTTTTGAACAGTTTCCTTGATTTTTCAGGTCATCTAGAGAGTATAGGAAGTGAGCTTGCCCAGAACAAACAAAACAAAGAAAGTCTACACTTGGAATTACTTTCAGATGTGCGTGGGAGTATTGCGAATCCACATCAGCAATTTCTAAATTTCATACATCAATGA 2361 43.5 MSSDSDEDELLQMALKEQEQRDVNYLPNSRKPVANYVQPPSQHRKPASAAASKTSGSNAQPKGGRTVVDDDDDSEVEMLSISSGDEDSTKDQRASAGGGRGGRAARSSGRDDDPGWDGEEPHCWKHVDEDELARRVREMRETRTAPAPQKFDRKVSAVGRPGLSNLPSMPRGMEYIDPLGLGVIDSKSLRLITEESENSPSRSEKDYIDGTLREKLLYLSERFDAKIFISRIHQNTSAADLEKGAFALKTDLKGRTQQRKQLVKNNFDCFVSCKTTIDDIESKLRRIEEDPEGSGTLHLYNCIHGVSKQANRAFQSLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRSSISKGEYDLAVREYKKAKSIALPSHVGILKKVLEEVEKVMHEFKGTLYNTMEDPQTDLTNLENTVRLLLELEPESDPVWHYLNIQNHKIRGLLEKCTLDHESRMEALNNKMRERAFADARWRQIHQDLDQSSDVHHSSALDGHLPLGVKPVEVNSEEVDALRARYIRRLTAVLIHHIPTFWKTALSVFSGKFAKSSQVSTEFANPSASKNEDKVSEGKYSNHSVEEVAGMLRNTLSAYGVKVHSTFRDLEESNILQSYMSDAITEISSACEAFVVKESAPSSAVIALRTLQSEVTKIYILRLCAWMRASIVRISKEETWVPVSIIERNKSPYTISFLPLAFRSIMSSAMDQINFMVQSLASEASKSKDILLQLQEIEESVRLAFLNSFLDFSGHLESIGSELAQNKQNKESLHLELLSDVRGSIANPHQQFLNFIHQ 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7936643 7968649 - Carg27550-RA Car01g00873 141737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00873 786 Pfam Exocyst complex component Sec5 177 760 IPR039481 -
Car01g00873 786 MobiDBLite consensus disorder prediction 105 122 - -
Car01g00873 786 MobiDBLite consensus disorder prediction 41 62 - -
Car01g00873 786 MobiDBLite consensus disorder prediction 1 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00873 K17637 EXOC2, SEC5; exocyst complex component 2 - csv:101215110 1297.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00873 Car-Chr1:7936643 Car09g00999 Car-Chr9:6589288 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1384 . . . . Bpe02g00238 . . . . . . . Car01g00873 . . Cpe06g00902 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g01519 . . . . . . Cla09g00935 Cam09g0987 Cec09g0992 Cco09g0997 . . Cre09g0953 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006308 1 4 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 2 1 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00873 Car_Chr01 FPKM 58.049629 67.09243 29.191185 29.972813 39.138657 41.13612 40.742554 39.870071 41.062187 41.728386