Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00880 ATGGATGAGTTAGTCGGTGTAGATGATGACCGGACCTCAGGCTACTTTTCGGCGAGGGTGGTGGCTGCACTAATTGCTTTGAAGAAGGGTTCTCAACTCCTCAAGTATGGTCGTAAAGGGAAACCAAAATTTTGTCCATTTAGACTTTCTAATGATGAGTCATCTTTAATTTGGATTTCAACTACTGGTGAAAAGAGTTTGAAGTTTGCTTCTGTATCGAGAATTATTCCTGGACAAAGAACTGCCGTGTTCCATCGATATCTACGACCTGAGAAGGATTATTTATCATTTTCTCTGATTTACAACAATGGAAAACGATCTCTTGATCTGATTTGTAAGGATAAAGTCGAGGCTGAAATTTGGATAGCGGGCTTGAAAGCATTAATAGGTTCTGGTGACGGTGGGCGTTCCAAAATTGATGGATGGAATGACGGGGGCCTCTATCAAGATGACAGCAGTGACTTAACTTCAAGTAGCCCAAGTGACAGCTCCAATAGTGTCACTAGAGATATTAGTTCTCCTGAGACAAATATGCAAGCAAAAGGAACTAGTTCAGACATTTTTCGAGTTAGTGTTTCAAGTGCTCCTAGCTCCTCCAGTCATGGCTCTACACCAGATGACTGTGATGCTCTAGGAGATATATACGTATGGGGTGAGGTTATTAATGATAATTTTATGAAGCCTGGGGCTGATAGAGCTGTTAACGTGAGCTCAAGGACAGATGTGCTACTTCCGAAGCCACTAGAGTCCAATATTGTTCTAGATGCACAACATATAGCCTGTGGAGTCTGGCATTCTGCCATTGTCACGAGACAGGGGGAGGTCTTTACTTGGGGTGAGGAATCTGGAGGAAGGCTTGGCCTTGGAATGGGGAAGGATGTAACACAACCTCGTCTTGTTGAAGCCTTGGCAGCAACTACAATTGATCTTGTAGCATGCGGAGAGTTCCATACTTGTGCTGTTACAATGGATGGGGAACTTTATACATGGGGTGATGGTGTACATAATGCCGGGCTTCTTGGGAATGGAACTAATGTCAGCCATTGGGTGCCAAAGAGAATCTCAGGTATCCTTGAGGGGCTTCAGGTTGCAACTGTAGCATGTGGTCCGTGGCATACTGCATTGCTCACATCTATGGGGCAACTATTCACATTTGGAGATGGTACTTTTGGGGTTTTGGGTCATGGTGACAAAAAAAGCATTTCATATCCGAGAGAAGTAGAGTCTTTATCAGGCTTGAGGACAATTGCTGTTGCATGTGGAGTGTGGCATACTGCTGCTGTGGTAGAAGTTATTATGACACAATCTAGTGCCACTGTCTCATCAGGTAAATTGTTTACATGGGGTGATGGGGACAAGAATCGTTTAGGACATGGAGACAAGGAACCCCGGCTTAAACCTACATGTGTTCCAGCACTTATTGACTACAATTTTCATAAAATTGCTTGTGGGCACAGCATAACTGTTGGATTGACAACATCAGGACAAGTTTTCACGGTTGGAAGTTCAGTTTATGGTCAGCTTGGAAATCCCCATGCTGATGGGAAGCAACCATGCTTGGTGGAAGACAAGCTTTTCAGGGAGTTTGCTGAAGAGGTTGCTTGTGGTGCATATCATGTTATGGTACTTACCTCCAAAAATGAAGTTTATACATGGGGAAAGGGTGCAAATGGGAGGTTAGGCCATGGAGATGTTGAGGATCGGAAATCACCAACTTTGGTTGAAGCTTTGAAGGATAAGCATGTTAAAATCATTGCTTGTGGTTCTAACTACTCCGCAGCTATCTGTCTTCATAAATCATTATTAGGTACAGAGCAGTCACAATGCTCTGCTTGTAGACAGGCATTTGGTTTCACAAGGAAAAGGCACAACTGTTACAATTGTGGGCTTGTGCACTGCCACTCGTGTAGTTCCAAAAAAGCATTAAGAGCTGCACTGGCTCCTACTCCTAGGAAACCTTATCGCGTATGTGATTCTTGTTTTTCCAAATTGAGCAAGGCATCAGAATCTGGAGTTAATTACCGGAAGAACGCTGTACCTCGCCCATCAGGTGAGAACAAGGACAAGGTGGACAAGAGTGACGCAAGACCTAAAGCAGCACTTTCCAATATGGATCTGATAAAACAACTAGATAGCAAAGCAGCCAAGCAAGGGAAGAGAACGGATACATTCTCTGTTGTTCGCCCCACTCAAGCACATACTCTTCTGCAACTCAAAGACGGTCCAAACGCTGCTGATATTCGGCGACTAGCTCCCAAGCCAATTCCTATGGCTAATGGAGTAAATTCCAGATCTATGTCACCTTCGTCAAGGAGATCTAGTCCACCAAGGTCTGCTACACCTGTCCCTACAGCATCAGGACTTTCCTTCTCCAAAGGTATAGCTGATAGCTTGAAGAAAACAAACGAACTTTTAAATCAAGAGGTTCTCATGCTGCGTGCACAGGTTGAGAGCCTAAGAAAGAGATGTGAACTTCAAGAGTTACAACTTCAGAAGTCGGAGAAGAAAGCACAAGAAGCTATTGCCTTGGCTACAGAGGAGTCTGCTAAATCCAAAGCGGCAAAAGAAGTTATTACATCACTAACTGCTCAGATTAAAGATATGGCCGAAAGATTACCCGATGGAGTAAAAATGAGCCTTCCTGGAAGTAACGACTCTGAAAACATGAGACCCTTCCATCTTCCAAATGGTATGGATCAAAATGGTGCACGCCATTTGGCTTCCAATGGAGAGCGTCAATCAGAATCTGATTCACACAGCTCTGTGTCTTTGGATTCTTCAATGGCAACTGACTATTCCTTAAGTAATGGATTTCAAGGTCCACCTAATTCATGTGGAGAATTCCCTGCAAGTAATGAAACTAACTCATCCATGGAGCTCGGGCAATTTACCTCTGATGGAATAGACGACGATTCAGATGTTAGACTGTCTTATGGTCATAGAGGGGGTTGGGAAAGCCGCAGCAGCAGCATGTCGGAGGGAGCAAATAGCTCGGGTCCTTTACTAGATAGTGAGAGTAACACAAGATCTAGAAGTTCTGCGTTGCCAAGTAATGACAATCAAGTTGAAGCTGAATGGATTGAACAATATGAACCTGGCGTCTATATAACTATGATGGCACTTCGTGATGGAACTAGAGATCTTAAACGAGTTCGCTTCAGGTAA 3165 43.85 MDELVGVDDDRTSGYFSARVVAALIALKKGSQLLKYGRKGKPKFCPFRLSNDESSLIWISTTGEKSLKFASVSRIIPGQRTAVFHRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEIWIAGLKALIGSGDGGRSKIDGWNDGGLYQDDSSDLTSSSPSDSSNSVTRDISSPETNMQAKGTSSDIFRVSVSSAPSSSSHGSTPDDCDALGDIYVWGEVINDNFMKPGADRAVNVSSRTDVLLPKPLESNIVLDAQHIACGVWHSAIVTRQGEVFTWGEESGGRLGLGMGKDVTQPRLVEALAATTIDLVACGEFHTCAVTMDGELYTWGDGVHNAGLLGNGTNVSHWVPKRISGILEGLQVATVACGPWHTALLTSMGQLFTFGDGTFGVLGHGDKKSISYPREVESLSGLRTIAVACGVWHTAAVVEVIMTQSSATVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKIACGHSITVGLTTSGQVFTVGSSVYGQLGNPHADGKQPCLVEDKLFREFAEEVACGAYHVMVLTSKNEVYTWGKGANGRLGHGDVEDRKSPTLVEALKDKHVKIIACGSNYSAAICLHKSLLGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPTPRKPYRVCDSCFSKLSKASESGVNYRKNAVPRPSGENKDKVDKSDARPKAALSNMDLIKQLDSKAAKQGKRTDTFSVVRPTQAHTLLQLKDGPNAADIRRLAPKPIPMANGVNSRSMSPSSRRSSPPRSATPVPTASGLSFSKGIADSLKKTNELLNQEVLMLRAQVESLRKRCELQELQLQKSEKKAQEAIALATEESAKSKAAKEVITSLTAQIKDMAERLPDGVKMSLPGSNDSENMRPFHLPNGMDQNGARHLASNGERQSESDSHSSVSLDSSMATDYSLSNGFQGPPNSCGEFPASNETNSSMELGQFTSDGIDDDSDVRLSYGHRGGWESRSSSMSEGANSSGPLLDSESNTRSRSSALPSNDNQVEAEWIEQYEPGVYITMMALRDGTRDLKRVRFR 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8064384 8072722 - Carg25043-RA Car01g00880 141744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00880 1054 MobiDBLite consensus disorder prediction 983 1020 - -
Car01g00880 1054 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 603 665 IPR017455 -
Car01g00880 1054 MobiDBLite consensus disorder prediction 681 698 - -
Car01g00880 1054 MobiDBLite consensus disorder prediction 671 702 - -
Car01g00880 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 273 324 IPR000408 -
Car01g00880 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 548 595 IPR000408 -
Car01g00880 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 273 321 IPR000408 -
Car01g00880 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 380 428 IPR000408 -
Car01g00880 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 494 543 IPR000408 -
Car01g00880 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 442 489 IPR000408 -
Car01g00880 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 324 376 IPR000408 -
Car01g00880 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 495 546 IPR000408 -
Car01g00880 1054 Pfam Transcription factor regulating root and shoot growth via Pin3 1023 1053 IPR013591 -
Car01g00880 1054 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 418 428 IPR000408 -
Car01g00880 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 431 IPR000408 -
Car01g00880 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 325 379 IPR000408 -
Car01g00880 1054 MobiDBLite consensus disorder prediction 874 1020 - -
Car01g00880 1054 MobiDBLite consensus disorder prediction 150 183 - -
Car01g00880 1054 MobiDBLite consensus disorder prediction 751 790 - -
Car01g00880 1054 ProSiteProfiles BRX domain profile. 1024 1054 IPR013591 -
Car01g00880 1054 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 366 376 IPR000408 -
Car01g00880 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 443 494 IPR000408 -
Car01g00880 1054 Coils Coil 795 843 - -
Car01g00880 1054 MobiDBLite consensus disorder prediction 760 790 - -
Car01g00880 1054 MobiDBLite consensus disorder prediction 902 963 - -
Car01g00880 1054 Pfam Transcription factor BRX N-terminal domain 846 880 IPR027988 -
Car01g00880 1054 Pfam FYVE zinc finger 605 665 IPR000306 GO:0046872
Car01g00880 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 547 598 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00880 - - - csv:101214149 1799.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00880 Car04g02348 CCT
Car01g00880 Car09g00994 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00880 Car-Chr1:8064384 Car14g00989 Car-Chr14:7475050 0 dispersed
Car01g00880 Car-Chr1:8064384 Car15g00562 Car-Chr15:3119510 0 wgd
Car01g00880 Car-Chr1:8064384 Car04g02348 Car-Chr4:18865849 0 wgd
Car01g00880 Car-Chr1:8064384 Car09g00994 Car-Chr9:6453846 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00880 Car_Chr01 FPKM 14.875408 14.998276 3.266535 3.799613 6.175097 8.608206 7.598772 5.654681 6.227085 4.606926