Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00881 ATGTATGTTCTGTATTCATGGCAATTGCCATTTTCTGCAGAAGGAAGGAGGGTTCTGCCATGGCAGACAACTTTTAGACCTGTTCAAGTTGCAGTACAAGCCAGCCAACTGATACAGCGTGCCCTCGACTGTGGACTCCAAATTTTCCCCTCGGCTCTTTGGTTTCTGGAGAAAGAGAGGGTTGATATTTGTCAGAAATGTGGGGACAGAGGCTTTGTTGAGGCTTTAAATTATTGTAAAAAATGCCAGACTTATCCTATCCATCGCTATTGCTTAGATGCATTGCCAAAAACTTTTGATGAGTATGTTACTTGGTTTTGTGAAGATTGTGAGGCAATTATGATGCCAGCAGTAAAATCTGATGTCAAATTAAAAAAGAAAAAGTGTGTCGAACAATCAAAGAAAAATGACACAACACCTGGAGGGCTGGGAGAGCAAGTTCGAGAAGGTGGGGCCAATCATGGTGAAGTCACAACATCATCTGATGCATCCAACTTTTTAAGGCACAACTGTTATGTTGCACGGCCTATAGTAGATCCTATTTGGAGGGGAACGTTAAAATTTTGGGTCAAAAGTTTTGCCAGAGTTGGTGTACTTGTTGCCCATATGTCTAGCTTAGCATGCTCAAAAGTGTACGAGGAGGCAAAATCGTTACCCGAGTCACTCCCTGTTGAATTACTCTGTAGATGTGAAATATGGCCTAGAGGATTTGAGAAATTAGGGCCAACTGATCTAAGTATTGCTCTTTATTTCTTTCCAGAAGACGAAAGAAGCCAAAGGGCATTTGATCTTCTGGTCAATGCAATGATGTGCAAGGACCTAGCCATGAAAGCTGTCCTGAAAAATGCTGAGCTATTAGTTTTTACTTCGTCCATGTTACCAATGCGATACTGGAGATTTCAAACAAAGTACTATTTGTGGGGCGTGTTCCGGGGAAAGCAAGTTGCACAACCAAGAAATAATGTGGCTTCTGAGAGAAGTTTTACTGAGTCATTACCTTGTATGCAAAGCCCTATAAGTCCTTTAATCAATACCAATGTACATAGTTCCTACCTGATCTCAGCTCTTCTGAGGCCATTTACGCAACTGTCCAAAGGTCTGGTTTTTGTGCTTCAATGCCATATGCCAAGGAGAGAGGAGGGCGCATGA 1149 42.12 MYVLYSWQLPFSAEGRRVLPWQTTFRPVQVAVQASQLIQRALDCGLQIFPSALWFLEKERVDICQKCGDRGFVEALNYCKKCQTYPIHRYCLDALPKTFDEYVTWFCEDCEAIMMPAVKSDVKLKKKKCVEQSKKNDTTPGGLGEQVREGGANHGEVTTSSDASNFLRHNCYVARPIVDPIWRGTLKFWVKSFARVGVLVAHMSSLACSKVYEEAKSLPESLPVELLCRCEIWPRGFEKLGPTDLSIALYFFPEDERSQRAFDLLVNAMMCKDLAMKAVLKNAELLVFTSSMLPMRYWRFQTKYYLWGVFRGKQVAQPRNNVASERSFTESLPCMQSPISPLINTNVHSSYLISALLRPFTQLSKGLVFVLQCHMPRREEGA 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8081487 8087116 + Carg25044-RA Car01g00881 141745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00881 382 MobiDBLite consensus disorder prediction 134 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00881 - - - cmax:111480637 556.984
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00881 Car09g00993 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00881 Car-Chr1:8081487 Car20g00772 Car-Chr20:4570998 1.53E-20 dispersed
Car01g00881 Car-Chr1:8081487 Car09g00993 Car-Chr9:6420450 1.16E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1242 . . . . . . . . . . Cma01g00990 . Car01g00881 . . Cpe06g00895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g1573 Cmo01g01027 . . . . Car09g00993 . . Bhi09g01502 Tan01g3380 Cmetu01g2157 . . . . Cla09g00923 Cam09g0975 Cec09g0980 Cco09g0986 . . Cre09g0944 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005025 1 2 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 0 0 1 1 1 1 11 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00881 Car_Chr01 FPKM 24.014248 26.652315 33.611927 31.43577 62.253216 56.265903 64.703842 24.08506 24.049498 29.273085