Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00882 ATGGCTGCTACAACTTGTAGTCTTTCATCAATCGCCTCACCATTTCTTCCCCAGGCGTTTAGGTCAGTCGCCACAAGAACTCAAATCACCCCATCCCCATGCTTCTCCAAAATGAGGTTTCAACCCTTTCGTCTTCGGACACGGAGAAATTTTTTTATTCGATGCGCTCGAACTGAATCCAAAGCGGTCACGTTAGGTTCCAGAGCCCCAGATTTTGAGCTTCCTGAACCTCTTACAGGCAAAGTATGGAAATTAGAAGATTTTGAACCCTATCCTGCTTTACTGGTTATGTTTATTTGTAATCATTGCCCATTTGTTATACACTTGAAAAAGGATATTGTGAAACTTTCGAATTTCTATATGAAGAAAGGACTGGCTGTTGTAGCCATATCTTCAAACTCTGTAGCTACGCATCCACAGGATGGACCGGAGTTTATGGCAGAAGAAGCAAAAGCATTCAATTACCCCTTTCCATATTTATATGATGAATCACAGGAAGTTGCAAGGGATTTTGGTGCAGTTTGCACACCAGAGTTCTTTCTATTCAAAAAGGATGGGCGAAGGCCATTTGAGTTGGTTTATCACGGTCAATTTGATGATTCTCGACCATCAAATAGCAAGCCTGTCACTGGGAGGGATTTAAGTTTGGCATTAGATTGTGTTCTCAGTTGCCAACCAGTATCCACATTGCAGAAACCCAGTGTTGGATGTAGTATAAAATGGCATCCATAG 732 41.94 MAATTCSLSSIASPFLPQAFRSVATRTQITPSPCFSKMRFQPFRLRTRRNFFIRCARTESKAVTLGSRAPDFELPEPLTGKVWKLEDFEPYPALLVMFICNHCPFVIHLKKDIVKLSNFYMKKGLAVVAISSNSVATHPQDGPEFMAEEAKAFNYPFPYLYDESQEVARDFGAVCTPEFFLFKKDGRRPFELVYHGQFDDSRPSNSKPVTGRDLSLALDCVLSCQPVSTLQKPSVGCSIKWHP 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8091612 8094294 - Carg25045-RA Car01g00882 141746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00882 243 Pfam Redoxin 66 187 IPR013740 GO:0016491
Car01g00882 243 ProSiteProfiles Thioredoxin domain profile. 63 223 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00882 - - - cmo:103500426 429.098
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1229 Blo01g01331 . Bda01g00696 . . . . . . . Cma01g00991 . Car01g00882 . . . . . . . . . . . . . . . . . . Cone4ag1514 Cone7ag1437 . . . . . . . . . . . . . . . Cmo01g01028 . . . . . . Cpe02g00901 Bhi09g01505 . . . . . . Cla09g00921 Cam09g0973 Cec09g0978 Cco09g0984 . . Cre09g0942 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010518 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00882 Car_Chr01 FPKM 5.913716 6.956574 0.137951 0.0 1.158776 1.47223 1.178585 0.0 0.0 0.0