Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00885 ATGGTGATGAACAAGCAAAGCTCCTACTCAACTCTTCCAAGCTTCAACAATGCCAAACCAAGAACAATCCTCCATTGCTTCAACCAAGTATGGATCCTCCCTTGCTTCCTCACCTTCCTCATCGCCATCGCCTCTACCTACACACTCCTCTTCCCCAACATCCACAAACTCCTCCACCTCACCCCCACCCTCCCACCCGACTGCAACGTCTTCGACGGCCAATGGGTCGAAGACAACTCCTCCACCTACCCAATCTACAACTCCACCCACTGCCCCTTCGCGGAGCGAGGGTTCAGCTGCTTGGAAAACGGGCGGAAGGACACGGCGTACATCAACTGGCGGTGGAAGCCAAAGCAATGCCACATTCCAAGGTTCGAGGCTGGGAAAGCGCTGGAGATGCTGAGAGGAAAACGGGTGGTGATTGTTGGCGACTCACTCAGCCGTACACAATGGGAGTCGTGGGTTTGTATGCTGATGGAAGGTGTGGAGAATAAGGAGAGCGTTTATGAAATCAATGGGAGTAATATCACTAAGACAATTCGGCATTTGGGAGTGAGGTTTAGAGACCATAACATCAGCGTGGACTTCTATAGGTCCGTGTTTTTAATGAAGAAGGATTATAAAGTGCCTGCCGGTGCACCGAACAACGTGAGGATGACGGTTAGATTGGACGAAGTGGACGATATTCGTGACCAATGGGTTGACTCAGATGTTTTGGTTTTTAACACCGGTGGTTGGTGGACTGAGAATCGACTTTTCAACGAGATGAGGTGCTTTTTTCAAATAGGGGACTCATTGGAGATGGGAATGTCTGTGATTGATGGGTATAAGATGGCGTTGAATACATGGGCTGATTGGGCTGAGGCTAATATCAATCCCAATAGGACAGCCGTTTTCTTCCGCACCATCGAGTCTACTCATTGGAGAGGACCGAACCAATGCGATGTGAGTCGGGAGCCGTTGAAGGAGACGAAGGGGAGAGAGAAGAGTGAAAAATCGGACATAATAATTGAAGTTTTGAGGAAGAAGATGAAGAGGGTTCCGGTGAGAGTGATGCATTTAACGGCGATGGGATCTTATAGAAGCGACGCTCATGTGGGGAATTGGGGTGACAACCCAGCCATGCAAGATTGTGGGCACTGGTGTCTTCCTGGCCTTCCCGATATTTGGAATCAAATTATCTTAACTTATTTTCTTCCTACAATCTCCTCTTTTAATTCCCACAACAATTGA 1233 48.58 MVMNKQSSYSTLPSFNNAKPRTILHCFNQVWILPCFLTFLIAIASTYTLLFPNIHKLLHLTPTLPPDCNVFDGQWVEDNSSTYPIYNSTHCPFAERGFSCLENGRKDTAYINWRWKPKQCHIPRFEAGKALEMLRGKRVVIVGDSLSRTQWESWVCMLMEGVENKESVYEINGSNITKTIRHLGVRFRDHNISVDFYRSVFLMKKDYKVPAGAPNNVRMTVRLDEVDDIRDQWVDSDVLVFNTGGWWTENRLFNEMRCFFQIGDSLEMGMSVIDGYKMALNTWADWAEANINPNRTAVFFRTIESTHWRGPNQCDVSREPLKETKGREKSEKSDIIIEVLRKKMKRVPVRVMHLTAMGSYRSDAHVGNWGDNPAMQDCGHWCLPGLPDIWNQIILTYFLPTISSFNSHNN 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8113144 8114680 + Carg25048-RA Car01g00885 141749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00885 410 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 122 396 IPR026057 GO:0016740
Car01g00885 410 Pfam PMR5 N terminal Domain 67 121 IPR025846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00885 - - - csv:101210098 677.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00885 Car-Chr1:8113144 Car02g00446 Car-Chr2:3508521 1.76E-142 dispersed
Car01g00885 Car-Chr1:8113144 Car08g01042 Car-Chr8:7121111 2.04E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1212 . . . . . . . . . . . . Car01g00885 . . . . . . . . . . . . . . . . . . Cone4ag1521 . . . . . . . . . . . . . . . . Cmo01g01032 . . . . . . Cpe02g00898 Bhi09g01514 . . . . . . Cla09g00915 Cam09g0967 Cec09g0972 Cco09g0978 . . Cre09g0936 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008701 0 1 0 0 0 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 3 1 2 1 1 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00885 Car_Chr01 FPKM 0.0 0.20197 0.0 0.0 3.544705 3.531155 3.386783 0.0 0.0 0.0