Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00889 ATGTCACTAGTCGGGCCATCCGATCCATCTCCGTTGTCGTATGGAACTCGCAAACTCTACTCGTTGAAAGGAACCAAGAATGCTTCCGACTTGTCCACACAGAGATTTGGTTCCGAAAAGAATAGGACGATGTATATGAATGATTCGTATTGCAGTGAGAGCTACGACAAGTATTTCCTTGACTTCCCGATCGAAGAGCTATCGGTTTCTGGCATTTCTACTGATTCGTTTCATCCCAACGCTGCTTTGTATGGGCTAAGGGCTGATTCTCTATCCCCTTTGTGTGATTCGTTTACATGTTTTGATGCTTATCAATCGAACTCATACTCGGTTTGCCTTGAGAGTACAAGTCCAGAACAGCTGGATTTTGAGGATGATCAAGTGAGACAGAAGTTGCAAGAATTGGAGAGAGATCTGCTCGGCGAACCCGATTCTGCTGATTACGAGGATGAGATGTTTGCAAATGGCCAGAGCATGGAAATTGATAGCGAATGGGCGAATTCAATTCAAGATGCATTGCTTCATGACTCGCCGAAGGAATCGTCATCGACCAATTCTAATTTCAGTACCATTAGTAGCAATAAGGATGCATCTCAGATATCATCACAGAATCCCAGACAGATACTTATAGAATGTGCTTCTGCTATCTCAGAAGACAACTTTGAAGAAGCATCAGCTATGATAGAACAGCTCCGGGGTATGGTCTCGGTTCAGGGAGATCCCTCACAGAGGATCGCAGCGTATTTAGTGGAAGGTCTTGCTGCCCGGTTGTTGGAATCGGGAAAATGTCTTTATAAAGCCTTGAGATGCAAAGAACCTCCTTCCTCGGACCGTCTCGCAGCTATGCAGATCCTTTTTGAGGTCTGCCCCTGTTTCAAATTTGGCTTCATGGCTGCAAACTGTGCCATTATCGAGGCAGCGAAAGATGAGAAGAGAATTCACATAATCGATTTCGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTGGCAGCTCAGCCAGGTAAGCCACCACATTTGAGGCTAACTGGTGTTGATGACCCCGAATCGGTACAGCGCCCTGTTGGAGGTCTTAGACACATTGGACAAAGGCTCGAGCAGCTGGCGAAAGCGCTGCGGGTTCCATTTGAATTTCACGCAATCGCCTCAAATGCTTCAGATGTCACTCCCTCATTGCTCGCCTCCCGGCCTGGAGAAGCACTCATAGTAAACTTTGCTTTTCTGCTTCACCACATGCCAGACGAAAGCGTTTCAACCGTAAATCTACGAGACAGGCTTCTCCAAATGGTTAAGAGCCTGAATCCCAAACTAGTAACAGTCGTCGAACAGGACATGAATGCAAATACGACCCCATTCGTTTCAAGATTCATCGAAACGTATAACTACTACGCAGCTGTATACGACTCTCTCGATGTAACACTTCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGACAATGCTTGGCGAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGAAAGAGTAGAGCGATACGAAGTCGCTGGGAAATGGCGGGCAAGAATGACGATGGCTGGCTTCACTTCGTGTTCGATGAGCGAAAAGGTGACCGACCCGATACGTAAGCTTATTATGGAGGAGTATTGCGAGAGATTCAAGATGTATGAGGAAATGGGTACACTCCATTTTGGATGGGAAGAGAAAAGCTTGATAGTTACTTCAGCATGGAGGTAA 1731 45.58 MSLVGPSDPSPLSYGTRKLYSLKGTKNASDLSTQRFGSEKNRTMYMNDSYCSESYDKYFLDFPIEELSVSGISTDSFHPNAALYGLRADSLSPLCDSFTCFDAYQSNSYSVCLESTSPEQLDFEDDQVRQKLQELERDLLGEPDSADYEDEMFANGQSMEIDSEWANSIQDALLHDSPKESSSTNSNFSTISSNKDASQISSQNPRQILIECASAISEDNFEEASAMIEQLRGMVSVQGDPSQRIAAYLVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALRVPFEFHAIASNASDVTPSLLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLQMVKSLNPKLVTVVEQDMNANTTPFVSRFIETYNYYAAVYDSLDVTLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSEKVTDPIRKLIMEEYCERFKMYEEMGTLHFGWEEKSLIVTSAWR 576
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 8233682 8236560 + Carg27665-RA Car01g00889 141753
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car01g00889 576 Pfam GRAS domain family 206 576 IPR005202 -
Car01g00889 576 MobiDBLite consensus disorder prediction 176 202 - -
Car01g00889 576 ProSiteProfiles GRAS family profile. 196 576 IPR005202 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00558 Car-Chr1:3292228 Car01g00889 Car-Chr1:8233682 2.69E-69 dispersed
Car01g00889 Car-Chr1:8233682 Car20g00575 Car-Chr20:3226120 1.45E-155 dispersed
Car02g00572 Car-Chr2:4374846 Car01g00889 Car-Chr1:8233682 9.74E-64 dispersed
Car02g00819 Car-Chr2:5920169 Car01g00889 Car-Chr1:8233682 1.39E-90 dispersed
Car15g00993 Car-Chr15:7756044 Car01g00889 Car-Chr1:8233682 1.57E-89 dispersed
Car20g00340 Car-Chr20:1938505 Car01g00889 Car-Chr1:8233682 5.60E-65 dispersed
Car01g00889 Car-Chr1:8233682 Car09g00985 Car-Chr9:6331139 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2850 PF03514 GRAS 1.60E-130 CL0063 Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00889 - - cmax:111480557 1127.46