Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00893 ATGGATCACGCGGCGGATGCTCAGAGAACGGACTTGATGACCATCACTCGATTTGTGTTGAATGAGCAATCCAAGTACCCGGAATCGCGAGGGGATTTCACCATTTTGCTTAGTCATATCGTTCTTGGCTGCAAATTCGTCTGCTCTGCTGTTAACAAGGCAGGTTTAGCTAAACTTATTGGACTTGCTGGTGAGACCAATGTTCAGGGCGAAGAGCAAAAGAAACTGGATGTGCTCTCAAATGAAGTTTTTATTAAGGCTTTGGTCAGCAGTGGCAGAACTTGTATCCTTGTTTCTGAAGAAGATGAAGAGCCAACTTATGTAGAGCCATCTCGGCGTGGAAGGTATTCTGTTGTGTTTGATCCGCTTGATGGATCCTCCAACATTGACTGTGGCGTTTCGATTGGAACGATTTTCGGAATCTATCACTTGAACGATAGCCACGAACCTAACCTGGAAGACGTCCTTCAACCAGGAAAGAATATGGTTGCAGCAGGCTATTGCTTGTATGGCAGCTCTTGCACACTCGTTTTAAGTACTGGAACTGGTGTTAATGGATTCACTCTTGACCCTTCTCTTGGGGAGTTCATTTTAACCCACCCAGACCTTAAGGTTCCAAAGAAAGGAAAGATATATTCAGTGAATGAAGGAAATGCTAAGAACTGGGATGGTCCGACCGCAAAGTATGTAGAGAATTGCAAGTTTCCTACAGATGGATCACCCCCAAAGTCTCTGAGATACGTTGGAAGCATGGTTGCTGATGTGCATCGTACATTGCTTTATGGTGGTATCTTTTTGTACCCTGGTGACAAGAAGAGCCCTAACGGAAAACTGCGTGTGTTGTATGAAGTTTTTCCAATGGCGTTCTTGATGGAGGAAGCAGGAGGTCAAGCATTCACTGGCAAAATAAGGGCACTTGAGTTAGTTCCAAAGACGATACATGAGAGATCTCCCATATTTCTTGGTAGCTATGATGATGTTGAAGAGATCAAAGCTCTTTATGCTGCTGCTGCTGCTGAGAATAAATGA 1029 44.31 MDHAADAQRTDLMTITRFVLNEQSKYPESRGDFTILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNEVFIKALVSSGRTCILVSEEDEEPTYVEPSRRGRYSVVFDPLDGSSNIDCGVSIGTIFGIYHLNDSHEPNLEDVLQPGKNMVAAGYCLYGSSCTLVLSTGTGVNGFTLDPSLGEFILTHPDLKVPKKGKIYSVNEGNAKNWDGPTAKYVENCKFPTDGSPPKSLRYVGSMVADVHRTLLYGGIFLYPGDKKSPNGKLRVLYEVFPMAFLMEEAGGQAFTGKIRALELVPKTIHERSPIFLGSYDDVEEIKALYAAAAAENK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8272415 8275718 + Carg27669-RA Car01g00893 141757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00893 342 PIRSF FBPtase 9 339 IPR028343 GO:0042132
Car01g00893 342 PIRSF FBPtase_SBPase 9 339 IPR000146 GO:0005975|GO:0016791
Car01g00893 342 SUPERFAMILY Carbohydrate phosphatase 8 334 - -
Car01g00893 342 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 13 201 IPR033391 -
Car01g00893 342 ProSitePatterns Fructose-1-6-bisphosphatase active site. 276 288 IPR020548 GO:0005975|GO:0042578
Car01g00893 342 Gene3D - 204 342 - -
Car01g00893 342 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 205 334 IPR044015 -
Car01g00893 342 PRINTS Fructose-1,6-bisphosphatase signature 38 65 IPR028343 GO:0042132
Car01g00893 342 PRINTS Fructose-1,6-bisphosphatase signature 75 101 IPR028343 GO:0042132
Car01g00893 342 PRINTS Fructose-1,6-bisphosphatase signature 155 178 IPR028343 GO:0042132
Car01g00893 342 PRINTS Fructose-1,6-bisphosphatase signature 186 209 IPR028343 GO:0042132
Car01g00893 342 PRINTS Fructose-1,6-bisphosphatase signature 212 239 IPR028343 GO:0042132
Car01g00893 342 PRINTS Fructose-1,6-bisphosphatase signature 310 335 IPR028343 GO:0042132
Car01g00893 342 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 2 338 IPR000146 GO:0005975|GO:0016791
Car01g00893 342 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE, CYTOSOLIC-LIKE 2 338 - -
Car01g00893 342 Gene3D - 4 203 - -
Car01g00893 342 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 13 336 IPR000146 GO:0005975|GO:0016791
Car01g00893 342 CDD FBPase 20 334 IPR000146 GO:0005975|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00893 K03841 FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11] - csv:101205576 658.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00893 Car-Chr1:8272415 Car07g01018 Car-Chr7:5865599 3.06E-100 dispersed
Car01g00893 Car-Chr1:8272415 Car09g00977 Car-Chr9:6195911 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1386 Blo01g01724 . . . . . . Bma01g02503 . . . . Car01g00893 . . Cpe06g00880 . . . . . . . . Cla08g00367 Cam08g0791 Cec08g0351 Cco08g0459 Clacu08g0504 . Cre08g0333 . . . Cone20ag0383 . . . . . . Bda11g00878 . . . . . . Cmo01g01050 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008203 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00893 Car_Chr01 FPKM 8.794732 7.735295 24.754772 22.476665 39.274242 40.844597 49.80006 11.802575 10.350997 13.416614