Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00895 ATGTCATTTCGTAGTATAGTCCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCGAGGCGTAGTTTTGAGTTCAGACTGCCTGGTCACCATAGAGGTAAATCTCATGGATCAGTCCATGATCTGCTCGATCAACCTCTGGTAATTCAGACTAGTCGATGGGCTAGCCTTCCACCTGAGCTATTGCGGGATGTTGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGATATGTGCAAAGAGATCGTAAAAACTCCCGAGTTCTCTGGGAAAATTACGTTCCCTGTCTCCTTAAAGCAGCCCGGGACGCGTGATGGAACGATGCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTACCACCTTTACCTTTGCCTTAGTACTGCTTCTGGGTATTCGACTCTGAATATGTATAAATATACGTATGTAGTCACGGATATGTTTCTAAATAATGATACTCTTGCAGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCGAAAAGAACAAGGAGAGCGACTTGCACTGAGTACGTGATTTCCATGGATGCGGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTAAGGTCGAATTTTCTAGGGACCAAATTTATTATCTATGATACACAGCCTCCATACAACAATGCCCAGATTTCCCCACCAGGCCATAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCGAAGATCCCATCCGGTAGCTATAATATTGCTCAAATCTCCTATGAGCTGAACGTTCTTGGCACTCGAGGCCCCCGAAAGATGCACTGCACAATGCACTCCATCCCCGTCTCATGTCTTGAGCCTGGTGGCAGTGTTCCTGGCCAGCCCCAAGTTGTCACTCGACTCCTTGGTGATTCGTTTCGAAGTATATCGTTTTCGAAGTCTGCATTAAATTCTACAGAGTTCAGTAGTTCCCGCTTCTCTGATATCGTTGGTTCACGGGATGAAGATGAAGCGGGGAAGGAGAGGCCATTGATTCTTAGGAACAAGCCACCGCGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCAGGGGACGAGTAACCGTTGCATCTGTCAAAAACTTCCAACTGATCGCTGCAACAGAGGCTTCTTCTTCTACAGCTACAAACCAACACGCTCAATCTTCCCAGACCGACCACGACAAGATCATTCTTCAATTCGGGAAGGTCGGGAAGGACATGTTTACAATGGATTACCGATATCCATTGTCAGCATTTCAAGCTTTCGCTATCTGTTTGAGTAGCTTTGACACCAAGTTGGCTTGTGAATAA 1362 45.45 MSFRSIVRDVREGFGSLSRRSFEFRLPGHHRGKSHGSVHDLLDQPLVIQTSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWRDMCKEIVKTPEFSGKITFPVSLKQPGTRDGTMQCFIKRDKSNLTYHLYLCLSTASGYSTLNMYKYTYVVTDMFLNNDTLAALLVDNGKFLLSAKRTRRATCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGHSRRFYSKKVSPKIPSGSYNIAQISYELNVLGTRGPRKMHCTMHSIPVSCLEPGGSVPGQPQVVTRLLGDSFRSISFSKSALNSTEFSSSRFSDIVGSRDEDEAGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEASSSTATNQHAQSSQTDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8432076 8435416 + Carg26860-RA Car01g00895 141759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00895 453 Pfam Tub family 114 448 IPR000007 -
Car01g00895 453 Pfam F-box domain 53 100 IPR001810 GO:0005515
Car01g00895 453 ProSitePatterns Tub family signature 1. 373 386 IPR018066 -
Car01g00895 453 ProSitePatterns Tub family signature 2. 438 453 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00895 K19600 TUB, TULP; tubby and related proteins - csv:101206041 775.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00895 Car-Chr1:8432076 Car04g02358 Car-Chr4:18952185 0 dispersed
Car01g00895 Car-Chr1:8432076 Car15g00552 Car-Chr15:3044590 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g00895 . 1 453 TUB Transcription Factor Family AT1G76900 67.8 7.4e-171 597.4
Car04g00473 . 1 428 TUB Transcription Factor Family AT1G76900 70.5 2.2e-170 595.9
Car16g00326 . 1 428 TUB Transcription Factor Family AT1G76900 69.4 1.3e-167 586.6
Car04g02358 CST 1 434 TUB Transcription Factor Family AT1G76900 67.8 7.2e-166 580.9
Car15g00552 CST 1 460 TUB Transcription Factor Family AT1G76900 67.1 2.0e-163 572.8
Car16g00653 . 1 414 TUB Transcription Factor Family AT1G76900 51.5 8.1e-117 417.9
Car04g00698 . 1 413 TUB Transcription Factor Family AT1G76900 50.2 9.2e-113 404.4
Car06g01262 CCT,CST,ECH 13 386 TUB Transcription Factor Family AT1G76900 51.2 5.1e-111 398.7
Car16g00326 . 174 428 TUB Transcription Factor Family AT1G25280 73.8 5.6e-102 367.9
Car04g00473 . 174 428 TUB Transcription Factor Family AT1G25280 72.0 3.4e-99 358.6
Car01g00895 . 200 453 TUB Transcription Factor Family AT1G25280 68.2 5.6e-94 341.3
Car04g02358 CST 175 434 TUB Transcription Factor Family AT1G25280 68.8 6.5e-90 327.8
Car15g00552 CST 199 460 TUB Transcription Factor Family AT1G25280 67.5 1.6e-88 323.2
Car06g01262 CCT,CST,ECH 150 386 TUB Transcription Factor Family AT1G25280 53.1 6.7e-71 264.6
Car16g00653 . 178 414 TUB Transcription Factor Family AT1G25280 55.3 1.1e-70 263.8
Car14g01476 CCT,CST,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.6 1.3e-69 260.4
Car04g00698 . 177 413 TUB Transcription Factor Family AT1G25280 56.2 3.7e-69 258.8
Car08g01080 CCT,ECH 154 386 TUB Transcription Factor Family AT1G25280 53.2 1.5e-67 253.4
Car01g01497 CCT,ECH 181 412 TUB Transcription Factor Family AT1G25280 54.3 5.9e-67 251.5
Car09g00133 CCT,ECH 180 407 TUB Transcription Factor Family AT1G25280 53.4 2.2e-66 249.6
Car08g01080 CCT,ECH 98 386 TUB Transcription Factor Family AT5G18680 62.1 2.6e-100 362.5
Car14g01476 CCT,CST,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.3 2.0e-95 346.3
Car06g01262 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT5G18680 60.8 3.4e-92 335.5
Car04g00473 . 113 428 TUB Transcription Factor Family AT5G18680 53.1 1.3e-83 307.0
Car04g02358 CST 112 434 TUB Transcription Factor Family AT5G18680 52.1 3.8e-83 305.4
Car16g00326 . 113 428 TUB Transcription Factor Family AT5G18680 53.1 8.5e-83 304.3
Car16g00653 . 116 414 TUB Transcription Factor Family AT5G18680 52.6 3.7e-78 288.9
Car04g00698 . 115 413 TUB Transcription Factor Family AT5G18680 53.3 1.4e-77 287.0
Car09g00133 CCT,ECH 116 407 TUB Transcription Factor Family AT5G18680 51.4 2.9e-75 279.3
Car16g00653 . 1 414 TUB Transcription Factor Family AT2G18280 61.4 8.2e-142 500.7
Car04g00698 . 1 413 TUB Transcription Factor Family AT2G18280 60.8 1.5e-140 496.5
Car07g00424 . 1 433 TUB Transcription Factor Family AT2G18280 56.8 2.7e-129 459.1
Car09g00133 CCT,ECH 1 407 TUB Transcription Factor Family AT2G18280 59.4 2.0e-124 443.0
Car01g01497 CCT,ECH 16 412 TUB Transcription Factor Family AT2G18280 58.4 7.5e-119 424.5
Car04g00473 . 1 428 TUB Transcription Factor Family AT2G18280 52.4 1.3e-118 423.7
Car16g00326 . 1 428 TUB Transcription Factor Family AT2G18280 52.4 3.1e-117 419.1
Car04g02358 CST 1 434 TUB Transcription Factor Family AT2G18280 52.6 1.1e-114 410.6
Car08g01080 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.3 1.5e-114 410.2
Car14g01476 CCT,CST,ECH 1 387 TUB Transcription Factor Family AT2G18280 52.8 8.0e-113 404.4
Car06g01262 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G18280 52.9 1.8e-112 403.3
Car04g00544 . 50 383 TUB Transcription Factor Family AT2G18280 51.6 9.8e-95 344.4
Car16g00401 . 53 396 TUB Transcription Factor Family AT2G18280 51.0 1.3e-91 334.0
Car08g01080 CCT,ECH 1 386 TUB Transcription Factor Family AT2G47900 68.2 7.6e-159 557.4
Car06g01262 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G47900 67.9 2.1e-156 549.3
Car14g01476 CCT,CST,ECH 1 387 TUB Transcription Factor Family AT2G47900 67.0 4.6e-156 548.1
Car01g00895 . 1 453 TUB Transcription Factor Family AT2G47900 53.2 6.7e-131 464.5
Car04g00473 . 1 428 TUB Transcription Factor Family AT2G47900 55.7 1.5e-130 463.4
Car16g00326 . 1 428 TUB Transcription Factor Family AT2G47900 55.7 6.3e-129 458.0
Car04g02358 CST 1 434 TUB Transcription Factor Family AT2G47900 54.9 3.5e-127 452.2
Car15g00552 CST 1 460 TUB Transcription Factor Family AT2G47900 52.6 6.5e-126 448.0
Car16g00653 . 1 414 TUB Transcription Factor Family AT2G47900 56.4 2.7e-124 442.6
Car04g00698 . 1 413 TUB Transcription Factor Family AT2G47900 55.8 1.1e-120 430.6
Car09g00133 CCT,ECH 50 407 TUB Transcription Factor Family AT2G47900 60.6 2.5e-117 419.5
Car01g01497 CCT,ECH 20 412 TUB Transcription Factor Family AT2G47900 56.0 1.5e-114 410.2
Car04g00544 . 51 383 TUB Transcription Factor Family AT2G47900 52.9 4.5e-103 372.1
Car08g00491 . 41 295 TUB Transcription Factor Family AT1G16070 57.5 4.4e-76 282.0
Car16g00326 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 1.5e-145 513.1
Car04g00473 . 66 428 TUB Transcription Factor Family AT1G43640 68.3 4.3e-145 511.5
Car01g00895 . 67 453 TUB Transcription Factor Family AT1G43640 63.6 8.4e-141 497.3
Car04g02358 CST 65 434 TUB Transcription Factor Family AT1G43640 63.6 2.1e-136 482.6
Car15g00552 CST 65 460 TUB Transcription Factor Family AT1G43640 61.3 7.6e-134 474.2
Car08g01080 CCT,ECH 47 386 TUB Transcription Factor Family AT1G43640 51.5 2.3e-106 382.9
Car06g01262 CCT,CST,ECH 49 386 TUB Transcription Factor Family AT1G43640 53.3 6.7e-106 381.3
Car14g01476 CCT,CST,ECH 49 387 TUB Transcription Factor Family AT1G43640 53.4 8.7e-106 380.9
Car09g00133 CCT,ECH 69 407 TUB Transcription Factor Family AT1G43640 52.1 4.2e-100 362.1
Car16g00653 . 69 414 TUB Transcription Factor Family AT1G43640 51.1 3.9e-98 355.5
Car01g01497 CCT,ECH 81 412 TUB Transcription Factor Family AT1G43640 50.1 6.9e-95 344.7
Car09g00133 CCT,ECH 34 407 TUB Transcription Factor Family AT1G47270 63.7 6.2e-134 474.6
Car01g01497 CCT,ECH 47 412 TUB Transcription Factor Family AT1G47270 62.1 7.8e-129 457.6
Car16g00653 . 34 414 TUB Transcription Factor Family AT1G47270 57.8 2.4e-122 436.0
Car04g00698 . 34 413 TUB Transcription Factor Family AT1G47270 57.8 2.7e-121 432.6
Car07g00424 . 33 433 TUB Transcription Factor Family AT1G47270 55.8 1.8e-117 419.9
Car04g00473 . 1 428 TUB Transcription Factor Family AT1G47270 52.3 1.6e-113 406.8
Car16g00326 . 1 428 TUB Transcription Factor Family AT1G47270 50.6 7.9e-113 404.4
Car08g01080 CCT,ECH 1 386 TUB Transcription Factor Family AT1G47270 50.7 6.2e-110 394.8
Car04g02358 CST 48 434 TUB Transcription Factor Family AT1G47270 52.3 8.2e-110 394.4
Car14g01476 CCT,CST,ECH 1 387 TUB Transcription Factor Family AT1G47270 51.2 2.1e-105 379.8
Car06g01262 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT1G47270 50.1 1.0e-104 377.5
Car04g00544 . 1 383 TUB Transcription Factor Family AT1G53320 70.5 4.9e-152 534.6
Car16g00401 . 1 396 TUB Transcription Factor Family AT1G53320 69.0 4.2e-151 531.6
Car04g00698 . 20 413 TUB Transcription Factor Family AT1G53320 50.5 2.1e-102 369.8
Car16g00653 . 20 414 TUB Transcription Factor Family AT1G53320 50.1 3.0e-101 365.9
Car08g01080 CCT,ECH 24 386 TUB Transcription Factor Family AT1G53320 50.1 5.2e-101 365.2
Car14g01476 CCT,CST,ECH 31 387 TUB Transcription Factor Family AT1G53320 50.8 1.4e-98 357.1
Car06g01262 CCT,CST,ECH 33 386 TUB Transcription Factor Family AT1G53320 51.2 8.5e-96 347.8
Car14g01476 CCT,CST,ECH 98 387 TUB Transcription Factor Family AT3G06380 63.4 8.5e-96 347.4
Car08g01080 CCT,ECH 98 386 TUB Transcription Factor Family AT3G06380 62.1 5.5e-95 344.7
Car06g01262 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT3G06380 63.8 1.6e-94 343.2
Car04g00473 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 1.7e-83 306.6
Car16g00326 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 4.1e-82 302.0
Car04g02358 CST 116 434 TUB Transcription Factor Family AT3G06380 52.0 8.5e-80 294.3
Car16g00653 . 120 414 TUB Transcription Factor Family AT3G06380 52.1 2.1e-78 289.7
Car04g00698 . 119 413 TUB Transcription Factor Family AT3G06380 53.2 4.0e-77 285.4
Car09g00133 CCT,ECH 120 407 TUB Transcription Factor Family AT3G06380 51.3 4.0e-77 285.4
Car07g00424 . 146 433 TUB Transcription Factor Family AT3G06380 52.4 1.2e-73 273.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2852 PF01167 Tub 6.20E-112 CL0395 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00895 Car_Chr01 FPKM 7.99142 9.136394 8.701426 8.55489 10.034585 10.532206 9.593 9.556887 8.913391 8.820976