Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00895 ATGTCATTTCGTAGTATAGTCCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCGAGGCGTAGTTTTGAGTTCAGACTGCCTGGTCACCATAGAGGTAAATCTCATGGATCAGTCCATGATCTGCTCGATCAACCTCTGGTAATTCAGACTAGTCGATGGGCTAGCCTTCCACCTGAGCTATTGCGGGATGTTGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGATATGTGCAAAGAGATCGTAAAAACTCCCGAGTTCTCTGGGAAAATTACGTTCCCTGTCTCCTTAAAGCAGCCCGGGACGCGTGATGGAACGATGCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTACCACCTTTACCTTTGCCTTAGTACTGCTTCTGGGTATTCGACTCTGAATATGTATAAATATACGTATGTAGTCACGGATATGTTTCTAAATAATGATACTCTTGCAGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCGAAAAGAACAAGGAGAGCGACTTGCACTGAGTACGTGATTTCCATGGATGCGGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTAAGGTCGAATTTTCTAGGGACCAAATTTATTATCTATGATACACAGCCTCCATACAACAATGCCCAGATTTCCCCACCAGGCCATAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCGAAGATCCCATCCGGTAGCTATAATATTGCTCAAATCTCCTATGAGCTGAACGTTCTTGGCACTCGAGGCCCCCGAAAGATGCACTGCACAATGCACTCCATCCCCGTCTCATGTCTTGAGCCTGGTGGCAGTGTTCCTGGCCAGCCCCAAGTTGTCACTCGACTCCTTGGTGATTCGTTTCGAAGTATATCGTTTTCGAAGTCTGCATTAAATTCTACAGAGTTCAGTAGTTCCCGCTTCTCTGATATCGTTGGTTCACGGGATGAAGATGAAGCGGGGAAGGAGAGGCCATTGATTCTTAGGAACAAGCCACCGCGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCAGGGGACGAGTAACCGTTGCATCTGTCAAAAACTTCCAACTGATCGCTGCAACAGAGGCTTCTTCTTCTACAGCTACAAACCAACACGCTCAATCTTCCCAGACCGACCACGACAAGATCATTCTTCAATTCGGGAAGGTCGGGAAGGACATGTTTACAATGGATTACCGATATCCATTGTCAGCATTTCAAGCTTTCGCTATCTGTTTGAGTAGCTTTGACACCAAGTTGGCTTGTGAATAA 1362 45.45 MSFRSIVRDVREGFGSLSRRSFEFRLPGHHRGKSHGSVHDLLDQPLVIQTSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWRDMCKEIVKTPEFSGKITFPVSLKQPGTRDGTMQCFIKRDKSNLTYHLYLCLSTASGYSTLNMYKYTYVVTDMFLNNDTLAALLVDNGKFLLSAKRTRRATCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGHSRRFYSKKVSPKIPSGSYNIAQISYELNVLGTRGPRKMHCTMHSIPVSCLEPGGSVPGQPQVVTRLLGDSFRSISFSKSALNSTEFSSSRFSDIVGSRDEDEAGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEASSSTATNQHAQSSQTDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8432076 8435416 + Carg26860-RA Car01g00895 141759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00895 453 Pfam Tub family 114 448 IPR000007 -
Car01g00895 453 Pfam F-box domain 53 100 IPR001810 GO:0005515
Car01g00895 453 ProSitePatterns Tub family signature 1. 373 386 IPR018066 -
Car01g00895 453 ProSitePatterns Tub family signature 2. 438 453 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00895 Car-Chr1:8432076 Car04g02358 Car-Chr4:18952185 0 dispersed
Car01g00895 Car-Chr1:8432076 Car15g00552 Car-Chr15:3044590 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2852 PF01167 Tub 6.20E-112 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00895 K19600 - csv:101206041 775.778