Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00906 ATGACTTCTTCACTCGAGATGCCAACATGGTTCTACATAGCCTTCATGATAATGGCTGCCATGGCGGACAATGAAGTCGACCGGTCAGCCATCGCCTTGCCGGGCTGCTCGTATCAATGCGGCGAAGTCGAGATTCCATACCCATTTGGACTCACTCCTGAATGCTCCCTTAATGAGGCATTTCTCGTCACTTGCAACACCTCGATTCTTCCCAACAAGCCGTTCGTCGACGACATTCCGATCATGAGTGTTTCGGTGGAAGATGCTGATTTGGTTATCGAAAATCTTGTGGCTAATTATTGTTTTGATGGCAAAGGAAATATGTCTGGCCACAATGAAACGCTTCTTAAGTTTGACAAGTTCACGATCTCGACGAAGAACATCTTCACCGTCATCGGTTGTAGTACTGTTTCGATGATCGGAGGCATCCTCCAAGATGATGAGGATTACTTGTCAGGTTGTGCATCCTTCGTGGTGGAGGAGGGTGAGTTCAGGTTCTCGCCGGCTTATGTTCCACACTTCCCGAACGCCACAGTGCCCATGGTGTTGGAGTGGTCCATCGGCAATGAGTCGTGTGAGGCGGCTGCGGGCAGCCAAGGGTTTGCGTGTCAGGGAAATAGTAGCTGCCTGAACCCTGGCTTCATGGGGGGCTACCGCTGCAACTGCTTGCGGGGATTCACTGGGAATCCTTATTTGCCACATGTTGGGTGCCAAGACATAAATGAATGTGATGATCCAAATGAGAATGAGTGTACGGATATATGTATAAATACGGAGGTTATCGATGTGAATGCCCAAATGGATACTCCGGTAGTGGCAGAAAGGATAGCAATGGCTGTGTCCCCCGCCGCCGGTTTCATACTCTCATATTAG 873 49.48 MTSSLEMPTWFYIAFMIMAAMADNEVDRSAIALPGCSYQCGEVEIPYPFGLTPECSLNEAFLVTCNTSILPNKPFVDDIPIMSVSVEDADLVIENLVANYCFDGKGNMSGHNETLLKFDKFTISTKNIFTVIGCSTVSMIGGILQDDEDYLSGCASFVVEEGEFRFSPAYVPHFPNATVPMVLEWSIGNESCEAAAGSQGFACQGNSSCLNPGFMGGYRCNCLRGFTGNPYLPHVGCQDINECDDPNENECTDICINTEVIDVNAQMDTPVVAERIAMAVSPAAGFILSY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8559815 8562324 - Carg26871-RA Car01g00906 141770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00906 290 CDD EGF_CA 203 228 - -
Car01g00906 290 PANTHER OSJNBA0016N04.9 PROTEIN 156 248 - -
Car01g00906 290 PANTHER OSJNBA0016N04.9 PROTEIN 13 158 - -
Car01g00906 290 Gene3D Laminin 189 268 - -
Car01g00906 290 Pfam Wall-associated receptor kinase galacturonan-binding 36 71 IPR025287 GO:0030247
Car01g00906 290 ProSiteProfiles EGF-like domain profile. 188 238 IPR000742 -
Car01g00906 290 PANTHER OSJNBA0016N04.9 PROTEIN 13 158 - -
Car01g00906 290 PANTHER OSJNBA0016N04.9 PROTEIN 156 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00906 - - - cmo:103490390 348.977
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g196 . . . . . . . . Cmo04g02519 Cmo15g00654 . . Car01g00906 . . . . Bhi04g01850 . . . . . Lcy10g1281 Cla08g00641 . . . . . . . Cone7ag1498 . . . . . Cme03g00459 Blo17g00163 . . Bda13g01455 Bpe02g01680 . . Bma02g00198 . Cmo01g01069 . . . . . Cpe01g02085 . . . . . . . . . . . . . . . Lsi08g00492 . Chy03g00552 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000104 3 8 3 4 2 5 1 5 5 8 7 5 10 11 3 9 5 3 5 6 7 5 5 3 4 16 0 1 1 10 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00906 Car_Chr01 FPKM 31.568306 30.142086 45.54697 39.161469 104.711235 108.442589 110.531364 48.898609 47.425976 49.301311