Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00929 ATGAGCGTCATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAGTATGACAAATACGACGTAGAGAAGCAGAGGGATCTCAATGTCTCCGGCGACGATGCCTTTGCTCGACTTTATGCTACTGTCGAAGCCGACATTGAAGCTGCCCTCCAGAAAGCGGAGGATGCTTCCAGAGAAAAGAATAGGGCGTCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACTAAGGCTCGATTACTGGAGGAGATCCCCAAGTTGCAGAGATTGGCTCTAAAGAGGGTGAAGGGGCTATCAACGGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCCGAAAGGATTCAAGCCATACCAGATGGGACTGCTACTTCCACGAAGAAGAATGGGGGTTGGACATCCTCTGCTTCACGCACTGAAATAAAATTTGACTCAGACGGGCGATTTGATGATGAGTACTTCCAACACACTGAGGAGTCGAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGACACTCTGAAGAACATGGCTCATGATATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATCGACACTAAGGTGGACAAGGCTGCATCTGATCTTAAGAATACCAACGTCAGATTAAAGCACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTTTATTGTGCATAATCTTGGGTATTGCTGCCTACCTATACAAGTAA 786 46.31 MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASREKNRASVVALNAEIRRTKARLLEEIPKLQRLALKRVKGLSTEDLTTRNDLVLALPERIQAIPDGTATSTKKNGGWTSSASRTEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIILLCIILGIAAYLYK 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8979636 8983200 + Carg23353-RA Car01g00929 141793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00929 261 Coils Coil 70 90 - -
Car01g00929 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Car01g00929 261 Pfam SNARE domain 207 256 IPR000727 -
Car01g00929 261 Coils Coil 40 67 - -
Car01g00929 261 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00929 Car-Chr1:8979636 Car17g00563 Car-Chr17:5227173 4.67E-123 dispersed
Car01g00929 Car-Chr1:8979636 Car14g00181 Car-Chr14:848935 6.49E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00929 K08506 - csv:101215905 481.485