Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00941 ATGCCTGCCGCCAAGTTCAACAAGAAGAAAGCTGTGAAACGAGACGACCCACAATCGAAAAGGAAGAAGAAGGACGAGCTCTTCACGCCCAAAACTGATTTTTCGTCTTCTGTTATCAGAATGTTTCTCGTTCTGTTTCTGGTTCGGATTCTGATGAATCTGACATCGAAGAGAAGTCGAGAGCTATTGATGAAGAAAGAGCGAGGGGAAGAAAAAGATGCAGCAGATGAAATGCAGCTCAATATTAAAGAAGAATCCGATGAGTTCAGATTACCAACCAAGGAGGAACTTGAAGAAGAGGCGCTTAGACCTCCTGACATTTCAAATTTACAAAAGGCGGATAAGAGGAAAGCTCTGAGGCAAGAGGGGGCGACCCGGAAGGATTATGTCGAACAACTTAAGAAAGATATTGGTTCATACTATGGTTATAACGAATTTCTTACTGGGGTTCTAGTTGAGTTGTTTCCTGTTGTCGAGCTAATGGAACTTATCGAAGCTTTTGAAAAGCCGAGACCAATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGTGATCTGGCAGATGTTCTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGAGCAACTCCTGAATATATGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTTCCTGTTATGGCCCTTGCTCCTCAAGAAAAGGAACGAATTGTTGACATGGCGGCAGCACCTGGTGGTAAAACTACTTACATAGCAGCGCTCATGAAAAATAGTGGAATAATATTTGCTAACGAGATGAAAGTACCAAGACTGAAGTCACTTACTGCAAATTTACATCGAATGGGAGTGACAAATACTGTTGTCTGTAACTACGATGGGAAGGAGCTCCCGAAAGTGTTGGGGATGAATACGGCCGATAGAGTTCTATTAGATGCCCCTTGTAGTGGATCTGGAGTTATATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCCTTGAAGAAATTCAGAAATGTGCTCAGTTGCAGAAGCAACTTATACTTGCTGCAATTGACATGGTTGATGCAAATTCAAAATCCGGGGGTTATATTGTTTACTCCACGTGTTCCATAATGGTCGACGAGAATGAAGCAGTTGTTGACTATGCACTAAAGAAGAGGAACGTGAAACTTGTTCCATGTGGCCTTGATTTCGGACGTCCCGGGTTTATCCGGTTTAGGGAAAAACGTTTTCACCCATCTTTAGAGAAGACGAGACGTTTCTACCCCCATGTCCATAACATGGATGGCTTTTTTGTAGCAAAGTTGAAGAAGATGAGCAACAAGATACCAACTGCTCGATCTTCAGAAGCATTGGAAGAAGAGGCAGTGGAAGAGGAGGATATTGAGACAGAGAAGAGTTCAAATGAGACGAACGATGGTGAATGCCTTCACCCGCAAGCGAACGATGGAAAAAAGAGGAAGAAGGTCGTTTCGGAAAAACACGAAGTTGAAAATGGCGAAGAATCGAAGCCGGGTGTGGAAAAGAGGAAGAAGAGAAAATTTCCCTCGAGAGAGGAAATCTCAAAAGCTAGGGAAGAAAAGCGACAAGCTTTGAGGGAAAAGAAAGCTGGTGGGAGCAAGAAATAA 1668 42.81 MPAAKFNKKKAVKRDDPQSKRKKKDELFTPKTDFSSSVIRMFLVLFLVRILMNLTSKRSRELLMKKERGEEKDAADEMQLNIKEESDEFRLPTKEELEEEALRPPDISNLQKADKRKALRQEGATRKDYVEQLKKDIGSYYGYNEFLTGVLVELFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGMNTADRVLLDAPCSGSGVISKDESVKTSKSLEEIQKCAQLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVDENEAVVDYALKKRNVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPTARSSEALEEEAVEEEDIETEKSSNETNDGECLHPQANDGKKRKKVVSEKHEVENGEESKPGVEKRKKRKFPSREEISKAREEKRQALREKKAGGSKK 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9071635 9076480 + Carg23339-RA Car01g00941 141805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00941 555 Pfam 16S rRNA methyltransferase RsmB/F 240 450 IPR001678 GO:0008168
Car01g00941 555 MobiDBLite consensus disorder prediction 1 25 - -
Car01g00941 555 MobiDBLite consensus disorder prediction 492 555 - -
Car01g00941 555 MobiDBLite consensus disorder prediction 457 555 - -
Car01g00941 555 MobiDBLite consensus disorder prediction 8 25 - -
Car01g00941 555 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 159 236 IPR031341 -
Car01g00941 555 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 163 452 IPR001678 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00941 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 845.114
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00941 Car09g00924 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00941 Car-Chr1:9071635 Car07g00493 Car-Chr7:2451496 5.41E-16 dispersed
Car01g00941 Car-Chr1:9071635 Car01g00943 Car-Chr1:9087609 3.25E-11 proximal
Car01g01123 Car-Chr1:10434392 Car01g00941 Car-Chr1:9071635 3.44E-07 transposed
Car09g00303 Car-Chr9:1686177 Car01g00941 Car-Chr1:9071635 3.46E-12 transposed
Car01g00941 Car-Chr1:9071635 Car09g00924 Car-Chr9:5690978 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00941 Car_Chr01 FPKM 4.061547 3.450623 5.022524 4.169953 5.733968 6.112917 6.124351 2.565531 2.094749 2.873854