Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00943 ATGCCTGCCGCCAAGTTCAACAAGAAGAAAGCTGTGAAACGAGACGACCCACAATCGAAAAGGAAGAAGAAGGACGAGCTCTTCACGCCCAAACGTGGAAAGAAAGAGGAGGAGAATGATTCTGACCTCTCTGATGCTCTGGATGAGGAAGAAGTAGAGGATGGAATGCTTGATGGTGATGAACAAGGATCTGGGTCTGGTTCTGGTTCTGGTTCTGAAGTTTCTTCTGATGGTGATGATCCCTTGGCTGATGATTTCTTCCATGGAAGTGACGAAGAGAATGTTTCTCGTTCTGTTTCTGGTTCGGATTCTGATGAATCTGACATCGAAGAGAAGTCGAGAGCTATTGATGAAGAAAGAGCGAGGGAAGAAAAAGATGCAGCAGATGAAATGCAGCTCAATATTAAAGAAGAATCCGATGAGTTCAGATTACCAACCAAGGAGGAACTTGAAGAAGAGGCGCTTAGACCTCCTGACATTTCAAATTTACAAAGGCGGATAAGAGAAATCGTTCGAGTTCTTTCAAATTTCAAGGCTTTGAGGCAAGAGGGGGCGACCCGGAAGGATTATGTCGAACAACTTAAGAAAGATATTGGTTCATACTATGGTTATAACGAATTTCTTACTGGGGTTCTAGTTGAGTTGTTTCCTGTTGTCGAGCTAATGGAACTTATCGAAGCTTTTAAAGCCGAGACCAATATGTTGCGGACTAACACCTTAAAGACAAGAAGGCGTGACCTGGCAGATGTTCTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGAGGCACTCCTGAATATATGGCTGGTGCAAGCTCCTTTCTTCCTGTTATGGCCCTTGCTCCTCAAGAAAAAGAACGAATTGTTGACATGGCGGCAGCACCTGGTGGTAAAACTACTTACATAGCAGCACTCATGAAAAATAGTGCTCCCGAAAGTGTTGGGGATGAATACGGCGATAGAGTTCTAATTAGATGCCCTTGTAGTGGATCTGGAGTTATATCTAAGGATGAATCTGTTAAAACCTCAAAAGGCCTTGAAGTGAAATTCAGAAATGTGGTGCTCAGTTTGCAGAAGCAACGTATACCTGCTGCAATTGACATGGTTGATGCAAATTCAAAATCCGGGGAAGAGGAACGTGAAACTGTTCCATGTGGCCTTGATTTCGGAACAGTCCCGGGTACTCACCATGCCTGCTTGCCCCGCCCACCCAGTTTATCCGGTTTAGGGAAAAACGTTTTCCACCCATCTTTAGAGAAGACGAGACGTTCTACCCCTGTCCATAACATGGATGGCTTTTTTGTAGCAAAGTTGAAGAAGATGAGCAACAAGATACCAACTGCTCGATCTTCAGAAGCATTGGAAGAAGAGGCAGTGGAAGAGGAGGATATTGAGGCAGAGAAGAGTTCAAATGAGACGAACGATGGCGAATGCCTTCACCCGCAAGCGAACGATGGTAAAAAGAGGAAGAAGGTCGTTTCGGAAAAACACGAAGTTGAAAATGGCGAAGAATCGAAGCCGGGTGTGGAAAGGAGGAAGAAGAGAAAATTTCCCTCGAGAGAGGAAATCTCAAAAGCTAGGGAAGAAAAGCGACAAGCTTTGAGGGAAAAGAAAGCTGGTGGGAGCAAGAAATAA 1686 44.42 MPAAKFNKKKAVKRDDPQSKRKKKDELFTPKRGKKEEENDSDLSDALDEEEVEDGMLDGDEQGSGSGSGSGSEVSSDGDDPLADDFFHGSDEENVSRSVSGSDSDESDIEEKSRAIDEERAREEKDAADEMQLNIKEESDEFRLPTKEELEEEALRPPDISNLQRRIREIVRVLSNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLTGVLVELFPVVELMELIEAFKAETNMLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGGTPEYMAGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSAPESVGDEYGDRVLIRCPCSGSGVISKDESVKTSKGLEVKFRNVVLSLQKQRIPAAIDMVDANSKSGEEERETVPCGLDFGTVPGTHHACLPRPPSLSGLGKNVFHPSLEKTRRSTPVHNMDGFFVAKLKKMSNKIPTARSSEALEEEAVEEEDIEAEKSSNETNDGECLHPQANDGKKRKKVVSEKHEVENGEESKPGVERRKKRKFPSREEISKAREEKRQALREKKAGGSKK 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9087609 9092609 + Carg22420-RA Car01g00943 141807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00943 561 MobiDBLite consensus disorder prediction 42 58 - -
Car01g00943 561 MobiDBLite consensus disorder prediction 103 128 - -
Car01g00943 561 MobiDBLite consensus disorder prediction 498 561 - -
Car01g00943 561 MobiDBLite consensus disorder prediction 8 41 - -
Car01g00943 561 MobiDBLite consensus disorder prediction 462 561 - -
Car01g00943 561 MobiDBLite consensus disorder prediction 1 128 - -
Car01g00943 561 Pfam 16S rRNA methyltransferase RsmB/F 294 327 IPR001678 GO:0008168
Car01g00943 561 Pfam 16S rRNA methyltransferase RsmB/F 328 388 IPR001678 GO:0008168
Car01g00943 561 Coils Coil 121 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00943 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 709.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00943 Car-Chr1:9087609 Car09g00924 Car-Chr9:5690978 0 dispersed
Car01g00941 Car-Chr1:9071635 Car01g00943 Car-Chr1:9087609 3.25E-11 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g696 . . Bda07g00417 . . . . . . . . . Car01g00943 . Sed04g3639 . . Bhi09g01791 Tan01g3207 Cmetu01g1798 . . Mch11g1292 . . . . . . . . . . . . . . . . . . . . Bpe11g00594 . . . . . . . . . . . . . . . . . . . Cla09g02088 Cam09g2175 Cec09g2241 . . . . . . Chy01g01130 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00943 Car_Chr01 FPKM 2.343115 2.441566 20.570866 20.946434 3.300132 3.752306 3.977188 0.824535 0.790102 1.174212