Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00964 ATGGCCCACAAACCTGCTTACTTCGTGCCTGATTCAATGTCAGTCTGGAATCTTCTCCGAGAGTTTCGTATCCGGAAAGTTCACATGGCTGTTGTGCTTAACGAATATGGCGGCACAGTTGGAATTGTAACACTGGAAGATGTGGTTGAGGAAATTGTAGGTGAAATCTTCGACGAAAACGATTCAAAGGGTCATCAATACGAAACGGTGTCGGGTTTTGTTTGTGAGGCTTTTGGATATATCCCAAGGACGGGTGAAAGCGTTAAAGTGGTCCTTGAAAAGGAAGACGAAGAAGCAGAAGAGTCAAATTCCGAAAACAAAAATCAGAAGCAAAAACGCCTAATCTTCAATATCGAGATATTAGCAGGAAATGCTAGAAAGGTTAGTGCTGTTCGGTTTGAACGGGTGAATGACGATAAAGGTGAGGTGGCTCATCTTGTCCCTAAAGTCATGGAGAAGAAATGGAGCAGTAATGGGGAGTCTGGTAGTGTAGAAAATGATAATATATTATCAGAGAGACTTGATGACAGCCTCTCTAGATTGCACCAAAACGATGATGATCATAGCAGTGATAGAAATTAG 582 42.1 MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKGHQYETVSGFVCEAFGYIPRTGESVKVVLEKEDEEAEESNSENKNQKQKRLIFNIEILAGNARKVSAVRFERVNDDKGEVAHLVPKVMEKKWSSNGESGSVENDNILSERLDDSLSRLHQNDDDHSSDRN 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9210322 9214598 - Carg22399-RA Car01g00964 141828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00964 193 Pfam CBS domain 3 53 IPR000644 -
Car01g00964 193 ProSiteProfiles CBS domain profile. 1 59 IPR000644 -
Car01g00964 193 Coils Coil 92 114 - -
Car01g00964 193 MobiDBLite consensus disorder prediction 169 193 - -
Car01g00964 193 Pfam Transporter associated domain 41 136 IPR005170 -
Car01g00964 193 MobiDBLite consensus disorder prediction 154 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00964 - - - bhj:120084424 296.204
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00964 Car-Chr1:9210322 Car09g00902 Car-Chr9:5569302 1.84E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00964 Car_Chr01 FPKM 18.591549 18.667967 25.569458 25.282642 28.077074 26.906818 29.324112 27.72979 28.247904 29.985432