Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00970 ATGGCTTCAGACAAGAACAACCATGGCAATCTTGAATCGGCAGTGCACGCTCTGGGACCGAACAGCCCCGGACCCCAGAGTCTCTCCTTCCATCTCTCTCAGCAAACCTCTCTCTGCCATGTCGAAACTGAAAACTCCATGAAAGTATCCCTCTCCAGGGATGACATTCCATACTTCTCTACCTTTCTCACAGCTTTGACCTGCCATAACTCCCTCAGAAGCTTGGAGTTTCATCTCGTCGATTGGGAACTCGAGCAATTGCGAGAGCTTTGCAGGTTGATCGAGGATAATTCAAGCGTTAGACAAGTCGTGTTTCGACGAAATAGATTGAGTAATGAATGCTTGGCAGAGCTGGGCTGTACTTTGAAAAGGAACAGAGGGATTAAGGAGCTTATGTTTTCGGAATGCGGGATCGGATCGGTTGGAGTTGGTTCGATTGCTTCTGGTTTGAAGGACAACGACTCGTTGGAGGAGCTGCAGATTTGGGAGGACTCAATCGGGTCGAAAGGAGCAGAAAAACTCTCCAAGATGGTTGAAGAAAACTCAACTCTAAAGCTGTTATCGATTTTTGACTCGAATTCAATCGCAGTAACTCCATTGATTTCTGCAGTTTTGGGAATGAACAGGAACATGGAACTGCACATTTGGATCGGAGAAAATGGCGGCAAAAGTTCAAAGGTGGTCGAGTTTGTACCTGGGAATAGTACACTCAGAATCTATAGGCTTGACATAAACGGTGCTTGCAGGGTTGCCTGCGCTCTCGGGTTAAACTCGACGGTTAAAACGCTCGACATGACAGGAATCCGACTAAAATCCCGGTGGGCGAAGGAGTTCCGTTGCGCATTGGAGCAAAACCAATGTCTTAGGGAAGTAAAACTATCTAAAACTCACTTAAAAGATGAAGCAATTGTTCATATAGCAGCTGGACTTTTCAAGAACAAGCACTTGCAGAGCTTGTTTCTTGATGGAAACTTGTTCACCGGCATCGGAGTCGAGCATTTACTCTGCCCTTTAAGCCGGTTTTCGACCCTGCAACAACAACCAAACATAACTCTCAAATGCATAGCGTTTGGAGGTCGAAGAAACAAGATAGGAAGAGATGGGCTTGCAGCCGTTTTACGTATGCTAACGACGAACGAAACTCTAACTCATCTCAAAATATATGATGATCATAGCTTGAGACCAAATGACATAGTCAGAATTTTCAGAAACTTGGAGAAGAATGCATCCTTAAAACACTTATCCTTACATGGCTGTAAAGGTGTTGATGGAGACATGGTGTTGCAGACAATAATGGAGATGCTTGAAGTAAATCCTTGGATAGAAGAAATCGACCTCTTCGGAACTCCTCTTCAGAATTCCGGAAAAGCTGATAGAGTTTACCAAAGATTAGGACAGAACGGGAACACCGACCTCGAACCACAGGTCGATTCGCTCGACATGACCTTGACAGAGCCGAAAAGTTGTCGGATTTTCTTCTGTGGGCAAGAATATGCAGGTAAAACTACTTTATGTAACTCCATATTACAGAACTTTGGATCAAAACTACCCTTCACAGACCAAGTAAGATCTTTGGTAGCTCCAGTTGAACAAGCAGTAAGAACAGAAGGAATGAAAATAAAAGCTTTCAGAGATGGGGACATCAAAATATCAATTTGGAATCTAGCAGGTCAACATGAATTCCATTCCCTACATGATCTTATGTTTCCAGGGCCTGGAAGTGCATCAGTTTTTGTAATCATCAGCAGTTTATTCAGGAAACCGAGTAATAAAGAATCGAAACATCCAAATGAGGTAGAAGAAGAGGTTCGGTATTGGCTAAGGTACATAGTTTCCAACTCGAAACGAGCACAGCAGCAATGCATGCTTCCTAATGTAACTTTGGTTCTAACACACTATGACAAAGTCATACAACCATCACAGAACTTGCAGCAAATTTTGATTTCAATTCAGGGACTAAGAGACAAATTCCAAGGTTACCTTGACATATACCCGACGGTATTTACCGTCGATGCACGTTCGTCAGCGACGGTAAATAAACTCTTGCATCACCTTCAGAGAACAAGCAGGACTGTTCTTCAAAGAGTTCCACAAGTTTACCAGCTCTGTAATGAACTGATACAAATTTTGAAAGACTGGAGATCAGAAAACTATAACAAGCCAGTAATGAGATGGAAAGAGTTCGAGGATCTATGTCAACTTCGCATCGCTCAGTTGAGAATCCGTTCGAGACGGAGTAATAAAGATAAGATCGAAACAAGGAGGAAGGCTATTGCTACTTGCTTACATGACATAGGAGAGGTGATTTACTTCGAAGAACTCGGATTTATGATATTAGATTGTGATTGGTTCTGTGGAGAAGTTCTTGGGCAACTAATAAGATTAGACATTAGGAACCATTCAAACAACAATAATGGATTCATCAGTAGGAGAGAACTCGAAAAGGTGTTAAGAGGCAAGTTACATAGCCAGATCCCAGGAATGAGTTCGAAGGTATTCGAAAACTTACAAGCAAGTGACGTTGTGGGAATGATGCTTAAGCTGGAGCTTTGTTACGAACAAGACCAGTCGGATCCGGATTCTCCATTGCTTATTCCATCGGTTCTTGAAGAAGGTCGAGGGAAGCCACAGAGATGGCCGTTGAGTATGCCGGACTGCATCTACACAGGGAGACACCTTGAATGTGATGATTCGAGCCATACGTTTTTAAATTGTTTTGTGTTGGTAATTCAGGTGCATTTGCATAACAGAATCATGGGATTAAAGAACCAATATGTAGCAACTTACAGCTTAGAGAAATACCTGATCACAATAAACATCAATGGAATTTATGTCAGGGTAGAGCTTGGAGGACAGTTTGGCTACTATATTGATGTCCTGGCATGCTCCACAAAGAGCTTGACCGAGACTCTCCGATTAATCCAGCAGCTTATAATCCCTGCGATTCACGACCTCTGTCATGGCATCATCTTGATCGAAAGCATTACGAGGCCCGAATGTGTGCGAAGTTTGGTGCCACCTAGACACAGGAAAACCCAGCAAGTCTCCATCCAACAACTGAAACTAGCATTGTTTTCAGTACCTGCCGATGGCATGTATGATTATCAGCATACATGGTGTCCTGTGTCGGATGGCGGTAGAGAAATTCTTGCAGTTGGCTTTGATTTCGCTCGGGATCTCTTGTCCGATGATGATTTCCGGGAAGTTTTGCATAGGAGGTACCATGACCTTTATGATCTAGCAGTTGAACTGCAAGTCCCACATGAAAACAACCCAGAAACAGTTGATAACGCACAAGCGAACGACGAAACAGATAAAGTTGAAGCGACGTTCAGTGGAATTGCGAAAGGGGTTGAAGCTGTTTTGCAGAGATTAAAGATCATTGAACAAGAAATCAGAGACTTAAAGCAGGAGATAAAAGGTCTAAGATATTATGAGCATAGACTCCTCCTCGAGCTTAATCGAAAAGTGAACTACCTAGTGAATTACAACGTTGAAATCGAAGAGAGGAGAGTACCAAACATGTTCTATTTTGTTAGAACAGAAAACTATTCAAGAAGGTTGATTACGAACCTGATTTCCGGCATGAATGCTCTCCGACTGCACATGTTATGCGAGTTCCGAAGGGAAATGCATGTTGTCGAAGATCAGATAGGCTGTGAAGTCATACAGATCGACAACATGGCAGTCAGGTCTTTAGCTCCATATATGACAAAGTTCATGAAACTGGTAACACTGTCTCTTAGAATAGGAGCCCAAGTAGCAGTTGGAATGGGACACATGATCCCAGATTTGAGTCGCGAGGTTGCGCATCTAGCCGATTCTTCTCTTTTTCATGGGCCAGCTGCGGCAGCTGCTGCAGGAGCTGTTGGAGCTGCAGCTATGGGACGTGTCGGCTTAAGCAGGGGAAGAACCAGAGCTGGAGACATTCAGAAAGAGCTCAAAACAGCACAGCAGTGGGTTCTGGATTACTTGAGAGAACAGAGGTGTTCAACTGGAAAAGATATCGCCGAGAAGTTCGGATTGTGGAGAGTGCGATACAGGGATGACGGCCACGTTGCCTGGATCTGTAGAAGGCACATGAACCTCAGAGCTCATGAAATAATTGAAGTTCCCATCTGA 4122 43.62 MASDKNNHGNLESAVHALGPNSPGPQSLSFHLSQQTSLCHVETENSMKVSLSRDDIPYFSTFLTALTCHNSLRSLEFHLVDWELEQLRELCRLIEDNSSVRQVVFRRNRLSNECLAELGCTLKRNRGIKELMFSECGIGSVGVGSIASGLKDNDSLEELQIWEDSIGSKGAEKLSKMVEENSTLKLLSIFDSNSIAVTPLISAVLGMNRNMELHIWIGENGGKSSKVVEFVPGNSTLRIYRLDINGACRVACALGLNSTVKTLDMTGIRLKSRWAKEFRCALEQNQCLREVKLSKTHLKDEAIVHIAAGLFKNKHLQSLFLDGNLFTGIGVEHLLCPLSRFSTLQQQPNITLKCIAFGGRRNKIGRDGLAAVLRMLTTNETLTHLKIYDDHSLRPNDIVRIFRNLEKNASLKHLSLHGCKGVDGDMVLQTIMEMLEVNPWIEEIDLFGTPLQNSGKADRVYQRLGQNGNTDLEPQVDSLDMTLTEPKSCRIFFCGQEYAGKTTLCNSILQNFGSKLPFTDQVRSLVAPVEQAVRTEGMKIKAFRDGDIKISIWNLAGQHEFHSLHDLMFPGPGSASVFVIISSLFRKPSNKESKHPNEVEEEVRYWLRYIVSNSKRAQQQCMLPNVTLVLTHYDKVIQPSQNLQQILISIQGLRDKFQGYLDIYPTVFTVDARSSATVNKLLHHLQRTSRTVLQRVPQVYQLCNELIQILKDWRSENYNKPVMRWKEFEDLCQLRIAQLRIRSRRSNKDKIETRRKAIATCLHDIGEVIYFEELGFMILDCDWFCGEVLGQLIRLDIRNHSNNNNGFISRRELEKVLRGKLHSQIPGMSSKVFENLQASDVVGMMLKLELCYEQDQSDPDSPLLIPSVLEEGRGKPQRWPLSMPDCIYTGRHLECDDSSHTFLNCFVLVIQVHLHNRIMGLKNQYVATYSLEKYLITININGIYVRVELGGQFGYYIDVLACSTKSLTETLRLIQQLIIPAIHDLCHGIILIESITRPECVRSLVPPRHRKTQQVSIQQLKLALFSVPADGMYDYQHTWCPVSDGGREILAVGFDFARDLLSDDDFREVLHRRYHDLYDLAVELQVPHENNPETVDNAQANDETDKVEATFSGIAKGVEAVLQRLKIIEQEIRDLKQEIKGLRYYEHRLLLELNRKVNYLVNYNVEIEERRVPNMFYFVRTENYSRRLITNLISGMNALRLHMLCEFRREMHVVEDQIGCEVIQIDNMAVRSLAPYMTKFMKLVTLSLRIGAQVAVGMGHMIPDLSREVAHLADSSLFHGPAAAAAAGAVGAAAMGRVGLSRGRTRAGDIQKELKTAQQWVLDYLREQRCSTGKDIAEKFGLWRVRYRDDGHVAWICRRHMNLRAHEIIEVPI 1373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9250159 9254375 + Carg22392-RA Car01g00970 141834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00970 1373 Pfam Ras of Complex, Roc, domain of DAPkinase 490 616 - -
Car01g00970 1373 Coils Coil 1118 1145 - -
Car01g00970 1373 Pfam C-terminal of Roc, COR, domain 749 876 IPR032171 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00970 - - - csv:101215001 2374.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00970 Car09g00896 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00970 Car-Chr1:9250159 Car05g00802 Car-Chr5:7324938 3.42E-10 dispersed
Car01g00970 Car-Chr1:9250159 Car09g00896 Car-Chr9:5535318 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g607 . . Bda07g00394 . . . . . . . . . Car01g00970 Car09g00896 Sed07g2724 Cpe06g00796 Cpe02g00804 Bhi09g01727 Tan01g3153 Cmetu01g0554 . Hepe01g1229 Mch11g1238 . . . . . . . . Cone6ag0031 Cone9ag0031 . . Lsi02g01858 Csa07g00975 . . . . . . Bpe11g00572 . . Bma14g00307 . Cmo01g01142 Cmo09g00987 . . . . . . . . . . . . . Cla09g02047 Cam09g2135 Cec09g2201 . . . . . . Chy01g01082 Cme01g00963
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006977 1 1 2 1 1 1 2 1 1 2 1 1 0 1 1 2 1 3 2 1 1 1 1 1 1 2 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00970 Car_Chr01 FPKM 7.605442 8.864573 13.280429 13.284952 6.83846 7.591677 8.552708 41.515701 39.05962 36.956947