Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00976 ATGGTTTCAGACCAAGAGCTTTCTGAAGCTTTACAATGTCTCTTACGCGATTCCGCTTCTCCTTCAAACCCTAACCCTTTTTCTTCCCTCAACGCTGTTGTTCTTGAGTTGCAGTCCAAGCTTGGCCTCGATTTGTCTCATAAGGTTGATTTCATCCATGCTCAGATTCAGCTAATCCTTCGCTCTCATCCTCAACAGCCTCAAATTCATCAGAATCATCATCATCAACAGCAGCAACCACCGCCTTCTTCGCAGAAAGACATCCTTCCCCCCCATCAAAGCCCTAATTTCCCATCTGCTCCTTCCCCCACTTCCTCTGCTTTTCATACTTTCACTGCTCAGCCTCCTCCGGCTAAGCCGGAAACCGCCGCCGCTCCTTCCACTGCTGTCGGTTCTGACCCGCCGAAGGAGAGCACTCAGACCAAGACTAAGAGAAGAGGAGGCCCGGGCGGGCTAAACAAGCTTTGTGGCGTTTCTCCTGAACTTCAGACAATTGTTGGGCAACCAGAATTGCCAAGAACTGAGATAGTGAAACAGCTATGGGCATACATCAGAAAAAATAACCTACAGGATCCGAGTAACAAAAGAAAAATAATATGCAACGATGAGTTGCGGTTGGTATTTGAAACAGACTGCACTGACATGTTCAAAATGAATAAGTTGCTAGCCAAGCACATCATTTCTCTTGAACCTACAAAACCGTCAAGTTCGAAGAAGGCACGAGTGGAGAGTGAACCTGCAATTGCTGTAAAAGCTGCAGAACCTAGTGTTTGTCCTTCTGTGATTATATCTGAAGCTCTTGCAAGTTTTTTTGGTGTTGATGGAAGGGAGATGCTCCAATCAGAGGTTCTGAGACGCATATGGGAATACATAAGAGCCAATCATCTTGAGGACCCACTAAACCCAATGGCGGTGTTGTGTGATGCAAAACTCCAAGAACTGTTTGGCTGTGAAAGCATTTCTGCACTGGGAATCCCAGAAGTTTTAGGCCGCCACCACATATTTAGGAGATCATGA 1017 46.31 MVSDQELSEALQCLLRDSASPSNPNPFSSLNAVVLELQSKLGLDLSHKVDFIHAQIQLILRSHPQQPQIHQNHHHQQQQPPPSSQKDILPPHQSPNFPSAPSPTSSAFHTFTAQPPPAKPETAAAPSTAVGSDPPKESTQTKTKRRGGPGGLNKLCGVSPELQTIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIISLEPTKPSSSKKARVESEPAIAVKAAEPSVCPSVIISEALASFFGVDGREMLQSEVLRRIWEYIRANHLEDPLNPMAVLCDAKLQELFGCESISALGIPEVLGRHHIFRRS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9288025 9293450 - Carg22386-RA Car01g00976 141840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00976 338 Pfam DEK C terminal domain 2 60 IPR014876 -
Car01g00976 338 SUPERFAMILY SWIB/MDM2 domain 259 333 IPR036885 -
Car01g00976 338 Pfam SWIB/MDM2 domain 156 226 IPR003121 -
Car01g00976 338 Pfam SWIB/MDM2 domain 262 332 IPR003121 -
Car01g00976 338 MobiDBLite consensus disorder prediction 84 98 - -
Car01g00976 338 MobiDBLite consensus disorder prediction 65 156 - -
Car01g00976 338 MobiDBLite consensus disorder prediction 65 83 - -
Car01g00976 338 CDD SWIB-MDM2_like 261 332 - -
Car01g00976 338 PANTHER - 1 334 - -
Car01g00976 338 ProSiteProfiles SWIB/MDM2 domain profile. 151 228 IPR003121 -
Car01g00976 338 SMART swib_2 152 231 IPR019835 -
Car01g00976 338 SMART swib_2 257 338 IPR019835 -
Car01g00976 338 SUPERFAMILY SWIB/MDM2 domain 145 231 IPR036885 -
Car01g00976 338 CDD SWIB-MDM2_like 156 226 - -
Car01g00976 338 ProSiteProfiles SWIB/MDM2 domain profile. 256 335 IPR003121 -
Car01g00976 338 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 334 - -
Car01g00976 338 Gene3D SWIB/MDM2 domain 256 337 IPR036885 -
Car01g00976 338 Gene3D SWIB/MDM2 domain 147 237 IPR036885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00976 K15223 UAF30, SPP27; upstream activation factor subunit UAF30 - csv:101217066 543.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00976 Car-Chr1:9288025 Car02g00433 Car-Chr2:3424337 1.43E-50 dispersed
Car01g00976 Car-Chr1:9288025 Car20g00968 Car-Chr20:11184916 7.59E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g593 Blo03g00535 Blo03g01462 Bda07g00384 Bda09g00413 . Bpe08g01108 . . . . Cma01g01104 . Car01g00976 . . . Cpe02g00797 Bhi09g01716 . . . . . . . . . . . . . Cone6ag0039 Cone9ag0041 . . Lsi02g01868 Csa07g00991 . . . . . . Bpe11g00562 . Bma07g01280 Bma14g00318 . Cmo01g01150 . . . . . . . . . . . . . . Cla09g02037 Cam09g2126 . . . . . . . Chy01g01071 Cme01g00979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004875 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2857 PF02201 SWIB 2.20E-18 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00976 Car_Chr01 FPKM 45.369171 49.0993 39.107658 38.832508 54.341995 50.659824 56.536011 35.092911 34.22583 33.215641