Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00978 ATGGCGTCTTCGGAAGACGAGGCGGAGGCCTTGCCACTGTGTGTTTCAAATTATCACTTCGTGGATCATAAGGAAGAACCTGTTTCATTCTCCATTTTGCCGATTATGTGGGATGAAGTGGACAGATTGGATGGCGGCCAAGAACCTGTTTTCCTGCATGGAACAGCTGATGATGGACTTCAAAAGGTTTATAAACAGGTAACTGCATGGAGGTTTGATATTTGTGGTGCAAATCCAGAGATATCGGTGCTTTCCAAAGAAAACGTGTGGATTAAGCTTCAGAAGCCTAGAAAGAGCTTTGAGGATACCATTAGAACCATCTTGATTACAGTACAATGCCTTCATGTTTTAAAGAAAGATCCGGACACACCTAGCAAATCTTTGTGGGATCAATTAGCCAAAATCTTCAGCTTGTATGAGGTGAGGCCTTCACAAAATGATTTGGTGGATCACATGTCTCTAATCAGTGAAACTGTCGAAAGGGATGATCAATTGGCGAAGTCCCAGTTCTTACTTGCATTCCTTGAAGAGAAGCCCATTAAGAAAAGGTCATGTCACGAGGATGTTCAATGTACAGCGAGGCCTAGTTTTATAGTTGATGATTTAGATGATGAGGACATGGTTGATGATGCTATTGAAGAGGAGAGTGATGATGACGTTTTTGACTCCGTCTGTGCATTTTGTGATAATGGTGGTAACCTTCTATGCTGTGATGGGAGGTGCATGAGGTCCTTTCATGCAACTGAAGAGAATGATGATGAATGTTTGTCACTTGGTCTCTCGAAAGAAGAAGTAGATGCAATTGAAAACTATTTTTGCAAGAATTGCGAGTATAAACAGCACCAATGTTATGCTTGCGGGAATTTAGGTTCATCTGATAAAGCTTCTGGTGCTGAGGTATTCCAATGTGTAAATGCAACTTGTGGTCATTTTTATCATCCTAAATGTGTTTCAAAATTGCTTCATCGTGAAAATAAAATTGCTGCTGAGGAACTTGAGAGGAAGATTGCTTCTGGAGAATCTTTTTCTTGCCCTGTGCATAAGTGTTCTGTTTGTGAACTTGGTGAAAATAAGAAAGTACACGAATTACAGTTTGCTGTTTGCCGTCGTTGCCCAAAATCCTATCACAGAAAATGCTTACCAAGGAAGATCACTTTTGAAGATTCAGACGATGATGAAACCACAACCAGGGCATGGGAAGGGCTATTACCTAATCGCATATTGATATATTGCTTAGACCATGATATCGATGAGGACATTGGGACACCAGACAGGGACCATATTAAATTCCCTGGACTTGAAAAGAGTAAAATTCCCATCCAGCAAAAGAAAATTCCTACAGTTGATACAAGAAAAGGGAAAACAATAGATTTTCGTGGGATTAGGGAAAGAGTTGTATCAAAAAAGGAAAATATGTCAGATGACCATTTTCAGGGAAAATCTGCTGCAAAAGTATCGAAATCATTTGAAAGGTCCTCATCTGAAGGGAAGGTTCTTAGCAAAGAAGCTGAGAAATCATTGTTGGGCTCTGAGTCTAGAAAAGTGAAATTAGGTAATGTTTCAAGAAAGTCTTTGAATCAAAATACAGAATCTGTCCGCATGGACATTGATAAGACTATCAAAGGGAAAAAATCCTCAGTTGTAAAGGCTGCCGCATCAACCAAGAGGTCTGATCAAAATAAGGCTTCCAAGGAGGATAACAGTGAACTGGGCAAGTCTGACGCCTCCAAGCCTCTGACAAAGAAGTTGAACAGTGGGATGGTTCAATTAGATGCCGATACGGAGAGGAGGCTAATGGATTTAATGAAAAATGTTGCATCTTCAATTACTTTAGAGGACGTAGTTCAGAAACACAAAGTACCATCTACTCATGCATACTCTTTAAAAAATGTTGTGGACAAGACAATTAAGATGGGGAAGTTGGAAGGTTCAGTTGAGGCTGTTCGAGCTGCTTTACGCAAGCTTGAGGAAGGATGTAGCATTGAGGAAGCAGAAGCTGTTTGTGAGCCTGAAGTTCTTTATCACATATTTAAGTGGAAGAACAAACTGAGAGTATATCTTGCACCGTTTCTTTATGGCATGCGCTACTCCTCCTTTGGTCGTCATTTTACAAAAGTTGAGAAACTTCAGGAGATTGTCGATAGGCTTCATTGGTATATACAGAAAGGCGATACAATAGTGGATTTCTGCTGCGGTGCTAATGATTTTAGCATTTTAATGAAGAAAAAACTTGATGAGACGGGTAAACCATGCTCGTATAGAAACTTTGACTTTATTCCACCGAAGAATGTTTTCAATTTTGAGAGAAGGGATTGGATGACTGTGCAACCCAAGGAATTGCCTAAAGGATCTCAATTGATCATGGGGCTAAATCCTCCATTTGGAGTTAAAGCTGCTTTGGCAAACAAGTTCGTTGATAAGGCTCTAGAGTTTAAGCCAAAGCTCGTTATTCTTATTGTTCCTCCTGAAACCGAGAGGTTGGATAAAAAAAAGACTCCTTATGACCTGGTTTGGGAGGATAATGAGTTTTTGTCAGGAAAGTCATTTTATCTTCCTGGATCTGTCAATGCAAAAGATAAACAGATGGATCAGTGGAATGTCAGGCCACCTGTGCTCTATTTGTGGAGTCGTCGTGACTGGGCCGATAAACACAAAGCCATAGCACAAGAGCACGACCATCTCCGTCCCCGGAAACAAGAGGAATCAGAAAAAGAGAAGACTTCTGATACCTCAAGGGTGAGGCAACCAGAGGAATCAGAAAAGGGAAAGAGTTCTGATTTGTCTAGGCTAAGGCAAAAAGAGGATTCAGGAATGGGATTAGGATCTGAAACCTCAAGGCCAAATCAATCGGAGTCGGAAAAGGGCCGAAGCTCTAAAACTTCTGATGATCATATTCATCTCAATGATACATTCCTGTTGGAATCTGTAATGCCAGCAGATGAACCAGAAGATTCCAAGAGTGGATCAGTCTCCTGTGACGTTCATAAAAACGGGTCTGTGAAAGGATCAAAGAGGGATAACGACAGAGAGAGTCATGACAGTCGAGACCGCCGTACTAATCTGTCTCCTGAGGCTCCAAGAAAGAGGCAGCGTTTTGAAGAAATACCTAGAAGAGGTGATGGTGAGACATCAGAAGAGAGCCGACGTGATGGTAAAAGGCCTTCTCCAAATGTGAGTGATCGTAGATCCTCGTTGGCTGGTTTATTGTCCAGTTCTGAGGTGGGAGGGATTGGACATCAGCAGTCGGGGTCGACTAAGCCTGGTTTCGATGCTAACTTCCAAGCTGCTAATGATGCAGCAGCACGAACTAGCATAATTAACGACGTTGCTCGATATGCTGCTGTGGGAGGAATTGGACATCAGCAGTCGGGGTCGACTATGCCTGGCCAGAATGCTAACTTCCAAGCTGCTAATGAAGCAGCACGAACTAGCACAACTAACGACATTGCTCGATATGCTGCTGTGGGAGGGATTGGACATCAGCAGTTGGGGTCGACTATGCCTGGCCAGAATGCCAACTTCAGAGCTGCTTATGATGCAGCACGGACCAGCTCGACGGATGCCATTGCGAGAAAGTACAACCAGGAGCCTCATCCAATTGGGACAAGTGGATGGTCAAACAATGCAAGCCTCAGTTCCGAAATTGGGTCTAGACAATTCGAGGACCGTATCATCGATCAAATGGGACGACATGCTGATGGCCTTAATTATGCACCCTACACTACAGGGCACAACGCATACATGAGGGACTTGGAAATACGATCACAACTTCGTCGTTACGGGCATATGGATACCGACAATTTAAGAAGCAATTATCAAGCTGGACCTGAATCTGGGTATAACAACAGGATTGGGTCATTCCCACCTACTTATGGGCATCTGGGTACGCCCTCTGAACCATCTCACTGGATGAACACTTCAGCGACGCAACGATACATGCCTCGACTCGATGAGTTGAACCACACCAGATTGGCAGGAATGGGTGCTGGGCATCAGATGAATGGCAGTGGCACTATCGACCCGAGATCTCACCTGCCCCCTGGTTTCAGGGGTGCGCCACAGGGGTTCGCTTCTGGTCCTCAGTACCCATATTCAAACCAGAATTCAGCTGGCTGGCTTAACGAGTAG 4128 43.41 MASSEDEAEALPLCVSNYHFVDHKEEPVSFSILPIMWDEVDRLDGGQEPVFLHGTADDGLQKVYKQVTAWRFDICGANPEISVLSKENVWIKLQKPRKSFEDTIRTILITVQCLHVLKKDPDTPSKSLWDQLAKIFSLYEVRPSQNDLVDHMSLISETVERDDQLAKSQFLLAFLEEKPIKKRSCHEDVQCTARPSFIVDDLDDEDMVDDAIEEESDDDVFDSVCAFCDNGGNLLCCDGRCMRSFHATEENDDECLSLGLSKEEVDAIENYFCKNCEYKQHQCYACGNLGSSDKASGAEVFQCVNATCGHFYHPKCVSKLLHRENKIAAEELERKIASGESFSCPVHKCSVCELGENKKVHELQFAVCRRCPKSYHRKCLPRKITFEDSDDDETTTRAWEGLLPNRILIYCLDHDIDEDIGTPDRDHIKFPGLEKSKIPIQQKKIPTVDTRKGKTIDFRGIRERVVSKKENMSDDHFQGKSAAKVSKSFERSSSEGKVLSKEAEKSLLGSESRKVKLGNVSRKSLNQNTESVRMDIDKTIKGKKSSVVKAAASTKRSDQNKASKEDNSELGKSDASKPLTKKLNSGMVQLDADTERRLMDLMKNVASSITLEDVVQKHKVPSTHAYSLKNVVDKTIKMGKLEGSVEAVRAALRKLEEGCSIEEAEAVCEPEVLYHIFKWKNKLRVYLAPFLYGMRYSSFGRHFTKVEKLQEIVDRLHWYIQKGDTIVDFCCGANDFSILMKKKLDETGKPCSYRNFDFIPPKNVFNFERRDWMTVQPKELPKGSQLIMGLNPPFGVKAALANKFVDKALEFKPKLVILIVPPETERLDKKKTPYDLVWEDNEFLSGKSFYLPGSVNAKDKQMDQWNVRPPVLYLWSRRDWADKHKAIAQEHDHLRPRKQEESEKEKTSDTSRVRQPEESEKGKSSDLSRLRQKEDSGMGLGSETSRPNQSESEKGRSSKTSDDHIHLNDTFLLESVMPADEPEDSKSGSVSCDVHKNGSVKGSKRDNDRESHDSRDRRTNLSPEAPRKRQRFEEIPRRGDGETSEESRRDGKRPSPNVSDRRSSLAGLLSSSEVGGIGHQQSGSTKPGFDANFQAANDAAARTSIINDVARYAAVGGIGHQQSGSTMPGQNANFQAANEAARTSTTNDIARYAAVGGIGHQQLGSTMPGQNANFRAAYDAARTSSTDAIARKYNQEPHPIGTSGWSNNASLSSEIGSRQFEDRIIDQMGRHADGLNYAPYTTGHNAYMRDLEIRSQLRRYGHMDTDNLRSNYQAGPESGYNNRIGSFPPTYGHLGTPSEPSHWMNTSATQRYMPRLDELNHTRLAGMGAGHQMNGSGTIDPRSHLPPGFRGAPQGFASGPQYPYSNQNSAGWLNE 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9295998 9313646 + Carg22384-RA Car01g00978 141842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00978 1375 MobiDBLite consensus disorder prediction 1359 1375 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 558 576 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 519 538 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 949 965 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 979 1090 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 519 533 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 1333 1375 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 889 965 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 889 933 - -
Car01g00978 1375 Pfam Cytosine specific DNA methyltransferase replication foci domain 16 136 IPR022702 -
Car01g00978 1375 MobiDBLite consensus disorder prediction 469 505 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 490 505 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 543 586 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 1058 1090 - -
Car01g00978 1375 MobiDBLite consensus disorder prediction 998 1057 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00978 - - - cmos:111445988 2718.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00978 Car_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0