Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g00980 | ATGGCGTATACTTTGGAGTCATGGACGAAGGAATACAATGAAGCTTTGAAACTCTCTGAAGAGATCAATGGCATGATTTCTGAGAGAAATTCACTTGCTGCGTCTGGCCCGGAAGCTCAACGTCACGCTTCGGCCATTCGCAGGAAGATCACGATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAACCGCCGCAGGGATATGATAGCAAATTTGAGATCAAAAGCTAACCAGATGGCTTCAGCTTTGAACATGTCGAACTTTGCAAACCGTGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTTATGAACAGAACAGCAGGCTTGGACAACCAGGGCCTAGTTGGTTTTCAACGACAAATCATGAGAGAGCAAGATGAAGGTCTCGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTGGCTGTCAATGAAGAACTTACCCTTCACACGAGACTTATTGATGATTTAGATGAACACGTTGATGTTACAGATTCACGATTACGGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAGCGGACCAAGGGTGGTTGCACTTGCATGTCGATGATTTTATCGGTTGTCGGGATCGTCGTTCTTGTTGCTGTTATATGGCTACTCATCAAGTATTTGTAA | 702 | 44.02 | MAYTLESWTKEYNEALKLSEEINGMISERNSLAASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKANQMASALNMSNFANRDSLLGPEIKPADVMNRTAGLDNQGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLVAVIWLLIKYL | 233 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9324160 | 9327261 | - | Carg22382-RA | Car01g00980 | 141844 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g00980 | 233 | SMART | tSNARE_6 | 132 | 199 | IPR000727 | - | |
| Car01g00980 | 233 | CDD | SNARE_Qc | 140 | 197 | - | - | |
| Car01g00980 | 233 | Pfam | SNARE domain | 174 | 224 | IPR000727 | - | |
| Car01g00980 | 233 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 137 | 199 | IPR000727 | - | |
| Car01g00980 | 233 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 6 | 228 | - | - | |
| Car01g00980 | 233 | Gene3D | - | 139 | 201 | - | - | |
| Car01g00980 | 233 | SUPERFAMILY | SNARE fusion complex | 128 | 199 | - | - | |
| Car01g00980 | 233 | PANTHER | SYNTAXIN | 6 | 228 | IPR045242 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g00980 | Car16g00895 | CCT | |
| Car01g00980 | Car09g00889 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00763 | Car-Chr5:5910496 | Car01g00980 | Car-Chr1:9324160 | 2.64E-07 | transposed | |
| Car16g00895 | Car-Chr16:7125309 | Car01g00980 | Car-Chr1:9324160 | 2.14E-85 | transposed | |
| Car16g00896 | Car-Chr16:7127512 | Car01g00980 | Car-Chr1:9324160 | 9.55E-27 | transposed | |
| Car01g00980 | Car-Chr1:9324160 | Car09g00889 | Car-Chr9:5458639 | 1.96E-87 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g00980 | K08503 | - | csv:101208669 | 408.683 |