Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00998 ATGCAGCGTGACGTATTTCTGATATGCTCAAATGCAATGCAATACAATTCACCAGAAACCATTTATCACAAACAGGCACGTTCCATTCAAGAGCTTGCCAAGAAGAAATTTGAGAGGGTAAGAATTGAAGTTGAACGCTCGGAGAAAGAGTTGAAGTTGGAGCAGAGTACAAAATTCAATTCATACATCAAGAAACAACCACCAAAGAAACCCCTTTTCAGGACTTTTCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACACTTGCTGGCACGGGCGATGTACAGAACAGTTCCAATCCAATCCATGGTGCTCACCGTGAGGTTCCTAACAATATTGATGGGCAAGTAGAGGGTAGTTCCTCCTTCCTTGATACTACTAATCTGGACAGGGCTGAAGAGCTCTTCTCAGGAAAGGGTCTTCTAGGTAAATTAGGGAGAAAGACATCTGTGTTTGATGACAACCGTCGTGCAACTTACAATATTTCTAATTCACCAGCGCCAAGATCGGAGTCGATATTTTCAACCTTTGAGGATGAAATAAGACAGCTTGTTGCGGTTGGACTTCATGCGGAGTATTCCTATGCAAGGAGTCTGGCTCGATTTGCTGCGACACTCGGTCCTAGTGCGTGGAAAGTTGCATCCCAGAGGATTCAGCAGGCTGTACCTGTTGGATGTAAATTTGGCCGTGGTTGGGTTGGAGAATACGAGCCACTTCCAACACCAGTATTATTGTTTGAGAACAACAACCAGAAGGAACTTGGTTTTAATAATAACTTGCATTCTACCAGCGAATTAAGAAAGAAGGATGGAAAGCCTTCAGACACTCCTTTGCCAAAGAAGGAATGTCCTCTAAGTGCACCAAGTACAGAGGTGAATGGTCTCGCTAGAGGATCCACCTTAGATGGGAAACCATCTTTCTTTAGGTCCTCCACCCCAAGTCCCGGTCTATCGCCACGGAAAAACCGACAGACCAAGAATTTTACAGAGGGAGAGAAGGTTAAAAACCAAGTTGAGTTAAATTCCTTGCCCTCATTTAAACAAAATAATGTTGATCTTGGTGTAGAGAAGCAGCTTCCAGCCAATCTGAATATGACTACTTCTAGATCTAGAGATGTTTCGTCGGTAAACTTGAATCTTGTGCAATCTGCGACATATAAACTCCGCAGTGTTAATGGCGTGGTGGCCAGAGGATTGTCTAACGGTAAATTCCCGAGCAATTGTTTGAATAGTCCACGGGCTGCTGTATCGTCTCCTAGCTTGCCTTCTCAAACAGCTCCAGTGGCAACTTCCCATGGACAGGACCTACACCCCAGTAAGCCGGTACAATTGATGAGAATGATGATACCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCTTCATCTGATTCTCTGCCAGCTTTATCATCAGCTCCTTCTGTAATGAGAGACGATTCTAATAATGCTGCTGCAGTAGCTTCTCGTGCATGGATGTCCATTGGGGCTGGAGGGTTTAAACAAGTCAGAGATAATTCCACACCTAAAAGTCAAATCTCTGCAGATTCACTGTATAATCCAGCTCGAGAATTTCATCCACAAATGACACGAGCATGGGGCGAGTTTCGTGCTGGAGGCAATCAGCTTCAGTCTGAGAAGAGTAATTTCCCCATGCAGGCATTTGTTCCACAAGCCACTCTTGTAGCAAATGAACAACAGCTGCAAAACCGGTCCATGATTTACCCTCAGCTAGTTCAGGCCGACATGTCTAAGTTCCAGTTGCAGTCGACTTGGCAAGCTCTCAGCCCACATAACCAGCCAAGGAAGAAACACGAAATGCTTCCTCCCGACTTGAATATTGGTTTTCATTCTCCTGGGTCTCCCGTGAAACAATCCTCTAGTGTTCTGGTTGACTCCCAGCAGCCAGACCTGGCTTTGCAACTTTAA 1935 44.91 MQRDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRIEVERSEKELKLEQSTKFNSYIKKQPPKKPLFRTFQEPIGSDFSSGATLAGTGDVQNSSNPIHGAHREVPNNIDGQVEGSSSFLDTTNLDRAEELFSGKGLLGKLGRKTSVFDDNRRATYNISNSPAPRSESIFSTFEDEIRQLVAVGLHAEYSYARSLARFAATLGPSAWKVASQRIQQAVPVGCKFGRGWVGEYEPLPTPVLLFENNNQKELGFNNNLHSTSELRKKDGKPSDTPLPKKECPLSAPSTEVNGLARGSTLDGKPSFFRSSTPSPGLSPRKNRQTKNFTEGEKVKNQVELNSLPSFKQNNVDLGVEKQLPANLNMTTSRSRDVSSVNLNLVQSATYKLRSVNGVVARGLSNGKFPSNCLNSPRAAVSSPSLPSQTAPVATSHGQDLHPSKPVQLMRMMIPERAPKQENSSNQSSSDSLPALSSAPSVMRDDSNNAAAVASRAWMSIGAGGFKQVRDNSTPKSQISADSLYNPAREFHPQMTRAWGEFRAGGNQLQSEKSNFPMQAFVPQATLVANEQQLQNRSMIYPQLVQADMSKFQLQSTWQALSPHNQPRKKHEMLPPDLNIGFHSPGSPVKQSSSVLVDSQQPDLALQL 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9447600 9450200 + Carg22364-RA Car01g00998 141862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00998 644 MobiDBLite consensus disorder prediction 455 484 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 257 333 - -
Car01g00998 644 Coils Coil 30 57 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 264 278 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 87 106 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 599 644 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 455 481 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 305 325 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 87 113 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 621 644 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 404 433 - -
Car01g00998 644 MobiDBLite consensus disorder prediction 404 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00998 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1033.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00998 Car09g00874 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00998 Car-Chr1:9447600 Car11g01413 Car-Chr11:11567020 1.73E-44 dispersed
Car01g00998 Car-Chr1:9447600 Car09g00874 Car-Chr9:5335676 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00998 Car_Chr01 FPKM 81.815735 84.614204 4.828454 4.924724 0.0 0.0 0.0 1.009811 0.338125 0.491803