Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01000 ATGAATGAGAAGGCCAACGTCACCAAGGAGCTTAACGCCCGCCACAGAAAGATATTAGAAGGGCTTCTTAAGTTGCCAGAGAATAGGGAGTGTGCTGATTGCAAAGCTAAGGGACCACGATGGGCTAGTGTTAATTTAGGCATTTTTATATGTATGCAATGTTCTGGGATCCACAGAAGCCTTGGTGTTCACATATCAAAGGTACGGTCTGCTACCTTGGATACTTGGCTTCCAGAGCAGGTTACATTTATACAATCAATGGGGAATGAGAAGGCAAACAGTTATTGGGAGGCGGAGCTACCTCCAAATTATGACAGAGTTGGGATTGAGAATTTTATTCGTGCAAAGTATGAAGATAAGAGATGGGTTTCTAAGGATGGCAAACCAAGATCACCTTCTCAAGTACAGGAGGAAAGGCCTTCTTTGCATGGGCAGAGGCCTGCGGAAAGAAGTGGATCAGGGTATTCAGGCCATTCTGAAAATTTGTTCGAGGAAAGGAAGAGACTTCAAACACATAGTGTGAAAGAGAGTATACCTGCCGCGAGAGTTAGTCTTCCTGTTCCTCCCAGAGGACCTGAACAGGTTGCTCCAGCCCCCAAACCATGCCAAGAGCCGAAACCAGAACCAGTTGTACAGCAAGCTGAAGCAACGAAACAGACTACAAATGATGCCCCAGCTGTCTCTCCAAAAGTTGATTATGCTACTGATCTTTTTAACATGCTATCCTTTGATGGCCCCTCTGATGATGGCTCAGCTGCAGTTTCTACAGATGATAGTTCATGGGCTGGTTTCCAGTCTGCTGAAGAAGCATCATCAGCAGAGAAACCTGCGCCAACAAAACCAGCTGAAGCCATTCCCCAGTCCACTTCTGGAATTGAGGATCTTTTCAAAGATTCAACCTTAGTTTCACCTTCTTTAGTTCCAGATAAACCTGTGAAAGATGTTAAAAATGATATAATGAGTCTTTTTGAAAAGTCCAATATGGTCTCTCCATTTGCTATGCATCAACAGCAACTTGCGATGCTAGCTCAGCAACAATCACTTCTCATGGCTGCTGCAGCTAAATCAGCTGCTGGGGACGCAAAATTTAGCAACGCTCAACCCGCTGTCCCCAATGGTACCAATGTTCCGCCTCAAAGTTGGCCAAATGTCACCTACCCGATCCCTGGATTGATGATGCAAATGGGTCCACAGGGTGGGCTGCAAACTACAGTGCAGACAATGAACAGGGGGCTGGCAAATCCAGTTGGGAGTTCTGTTTCATATCCTACATCTAGCCTTTATAGCTTCGGTCAAGTTTCTTCAGTGCCGGTGAATGGCGTGAGCACCACCACCACCAACACCACAGGGAAAAACAAACCTCAATCGACCGCATCGGTGTCATCAGCGACTCCTTCACAGTCAGGCAAAGAGTATGATTTCTCCTCTTTAACCCAAGGTATGTTTTCGAAGCATTAA 1458 45.88 MNEKANVTKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVTFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVSKDGKPRSPSQVQEERPSLHGQRPAERSGSGYSGHSENLFEERKRLQTHSVKESIPAARVSLPVPPRGPEQVAPAPKPCQEPKPEPVVQQAEATKQTTNDAPAVSPKVDYATDLFNMLSFDGPSDDGSAAVSTDDSSWAGFQSAEEASSAEKPAPTKPAEAIPQSTSGIEDLFKDSTLVSPSLVPDKPVKDVKNDIMSLFEKSNMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAAGDAKFSNAQPAVPNGTNVPPQSWPNVTYPIPGLMMQMGPQGGLQTTVQTMNRGLANPVGSSVSYPTSSLYSFGQVSSVPVNGVSTTTTNTTGKNKPQSTASVSSATPSQSGKEYDFSSLTQGMFSKH 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9474578 9480690 - Carg27980-RA Car01g01000 141864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01000 485 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Car01g01000 485 CDD ArfGap 19 117 - -
Car01g01000 485 MobiDBLite consensus disorder prediction 123 227 - -
Car01g01000 485 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Car01g01000 485 MobiDBLite consensus disorder prediction 190 206 - -
Car01g01000 485 MobiDBLite consensus disorder prediction 252 267 - -
Car01g01000 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 485 IPR044520 GO:0005096
Car01g01000 485 MobiDBLite consensus disorder prediction 247 290 - -
Car01g01000 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 485 - -
Car01g01000 485 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Car01g01000 485 MobiDBLite consensus disorder prediction 441 485 - -
Car01g01000 485 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Car01g01000 485 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Car01g01000 485 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Car01g01000 485 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Car01g01000 485 SMART arf_gap_3 16 130 IPR001164 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01000 K12486 SMAP; stromal membrane-associated protein - csv:101214277 738.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01000 Car16g00846 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01000 Car-Chr1:9474578 Car18g00083 Car-Chr18:441192 7.53E-74 dispersed
Car12g01212 Car-Chr12:11538489 Car01g01000 Car-Chr1:9474578 8.61E-18 dispersed
Car13g00800 Car-Chr13:8831146 Car01g01000 Car-Chr1:9474578 4.71E-18 dispersed
Car14g00435 Car-Chr14:2268699 Car01g01000 Car-Chr1:9474578 1.16E-18 dispersed
Car16g01098 Car-Chr16:9407085 Car01g01000 Car-Chr1:9474578 1.52E-20 dispersed
Car19g00191 Car-Chr19:1795824 Car01g01000 Car-Chr1:9474578 1.43E-22 dispersed
Car01g01000 Car-Chr1:9474578 Car09g00811 Car-Chr9:4911691 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g290 . . . . . . . . . . . . Car01g01000 . . Cpe06g00717 Cpe02g00724 . . . . . . . Cla11g01802 Cam11g1868 Cec11g1892 Cco11g1898 Clacu11g2031 Cmu11g1836 Cre11g2243 Cone6ag0115 Cone9ag0133 . . Lsi04g01282 . . . . . . . Bpe11g00502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g481 . . . . Bpe09g00183 . Bma10g00543 . Cmo16g00903 . . . Car01g01000 . . . . Bhi09g01625 . . . . . . Cla10g00517 . . . . . . . . Cone14ag1133 Cone15ag1154 . Csa03g00526 . Cme06g02265 Blo07g00911 Blo10g00819 . . . Bpe03g00797 . . . . . Cma04g00953 Cma16g00856 . Car16g00846 . . Bhi11g00636 . . . . . . . . . . . . . Lsi05g00612 . Chy06g01805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005696 1 1 2 2 2 0 2 1 0 1 1 1 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01000 Car_Chr01 FPKM 7.988537 9.340495 8.344437 8.029182 4.238927 4.546788 3.49885 9.89563 10.264332 10.184396