Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01020 ATGGATCCTCGCACTCGTTTGAATCATGCTCTGTTTCAGCTCACTCCCACTAGAACCAGATGTGAACTGGTTATCTCAGCTAATGGTGGTGCTACTGAGAAACTGGCATCTGGGCTTCTTCAGCCATTTATCTCCCACCTCAAATGTGCTCGAGATCAGATTTCTAAAGGGGGTTACTCCATTACTCTTCGCCCTATTGCAGGATCAAACGCTTCTTGGTTCACTAAGGGCACTCTTCAGAGATTTGTGAGATTTGTAAGCACACCAGAGGTTCTTGAGAGATTTGTTACCATAGAAAAGGAGATTGTGCAGATCGAGAATTCTATGTCCACAGATGCTGAAGAAAACGCAACAGTTGCTGATTGGAACTCGAAACGATCGAGCCCAACGCAGCGGGTGAAGGGCGATTCGGATGATATTAACGACGATGCTACATTGAAGGACAATCCCAAGATCCGTCTTCAACGTGTTTTAGAAACTCGAAAGGCTGTGCTACACAAAGATCAAGCAATGGCTTATGCTCGTGCTTCGGCTGCGGGATATGAGATGGATTATATTGAGGATCTTATAGCTTTTGCTGAGGCTTTTGGAGCTTCACGTTTGAGGGAAGCATGTATAAATTTTATGGACTTATGCAAGCGAAAGAACGAAGACAAGCTCTGGATAGACGAAATAGCAGCTATGCAGGCGTTCTCTCAGCCAGCATTTTCGTACTCAGAAACTTCTGGTATCGTACTAGCTGGTGAAGAGAACGAATCTAACGTCAATGCTCATGTATCAAAATCTGATTCGTCAGCAAGTCAAGGAAGTTCAGAGAACAATCAAGTGTTCTCTTATGATGAGAAAGAAAGACGTGCTTGTGTAGAGGGATGGCTTATCGATTTCGTTTCATATGGTAAAAAATACGCAGATGGTAGCCTTCCGAAATCAGCACAGATGTCGATGAATGGGAAAGCTCAAGTGCCAACGACGTGGCCTAATCATCCTCAATATATGCACAACTTTCAAGGTCCATTATATCCTCCATATCAAGGATATCTTTTCCCCGGAATGCAGGTGCCGCCGCCGTATTACCCAGGGAATATGCAGTGGCCATCAAATGCCGAGGACTTGAGTCTTGCTTCCGACCGAGAGCCTGGCGGTCATAGGAGTTCTAAATCTCGTAGGAGCAAGAAGAAACATTCACATAAGGAGAGAACTTCAGAACAAGAAGCAACTACAGAGTCTGGTGAATCCAGTGTCGACAGTGAATCGGACGAACAATCTTCAGATGATAAAGAGCAATACTCAACGGAAAAGATACGTAAGAAAAAGCATGGCAAGAAATCTTCAAGAACGGTCGTTATACGTAATATTAACTACATAACGTCAAAGAGGAATGGCGAAAAGGGTAGCCACTCAGAGGATGATTCATCCGACGAGGGTGAGTTTATTGATGGCGATTCCATCAAACAGCAGGTAGAGGAAGCTGTTGGGACGTTGGAGAGAAGACATAAGTCAACCGGTCGACACCAAAAGAAACAAAATGGCTATGACAATGCAGATGGCTTAAATGATTCTGCAGAACGGGAGACTAACGGTATATCGAACAATTCAGAGGGAGAAAAGATCAGTAGCCCATGGGATGCTTTCCAGAATCTTCTTATGAGCGAAAGGGAGCCGGAAAAGTCTCGTGAATTGCCCTCAGTTCAGGATCAAGACGGTCACGAGGGGAGGTCACCTATGCTAAACTTAGAATCAGAGAGAGCACCGAGACAACGTGAAGTTTCGAGTGATTCTTTCGTCGTGACAGACAGGAGTTCGGGTAATGAAGGGAGAACACATATCGAAAATTTTGAAGCTGGTGATGTTGCCAACCCAATTAATAGAAGGAGAGAAAGCACATATGAAGAGTTATTGTATTCACAAAGAGGTGGAGAATCAGGGAGCTATGTGCATTCCACTGCGTCCGATTTCACCAATGTGTCGTCCAGAATGAAGACGCAAACAGAAGGCGATTGGTTCGTCAGCAATCCGACTAATAAATCAGAAAATCAGTGTCAAAACGTCGGTCCCAGAGTTTACGACACCGACTTCTCTTCATCGGCTCAAGACCATTTGTATTCAGAGAAAAACAAGAAAGATGTGTTGGCTGATGACTCTTTCATGATTCAGCCTCGACCATTAGTAGATGACCAATCCGACTTTCAATCTAGACGAGACATAAGCATGGTGTCGGACATTGTTGGGGATGCCGAAAATGAGTATATCAAACAAGAAACCTCAAGAGACGAAAAGCCTGCAACTCTCGGTGTCAGTGAACCGGATGACCTTTACATGATGCTTGATCGTGATATAGCTACAGAGCACACGGTAGCATCTTGGAGCCCAGAAATGGACTACGAAAATAATTTTTCAACCATAGCGAAGAGTAAGCACAGTGAGATCGAAGCCGATGACGGTGGGGACAAGAGTAATAAAAATAAAGAATCTGGGGGCAAAGTTCCAAGTAAAGAAGCCAGATCCAAATCCTTGGGAGGACCTCTAGCTAAGGGAAAATATGACGTTCAATCACGAACACGAAAACCCCTTTCTGGAAGCAGAACTACCGTCCCGAAGAGCAAATTCGAGAAGGAAGAAGAGACGAGAAAGAGAATGGAAGAGTTGGCGATTCAACGCCAGAAACGAATTGCTGAAAGGAGTTCTAAGCCTGGTGTAACCAAGATTGAGAAGCAAAAAAGCCAATCCCTGGTCCAAGAAGCCAAGAAGTCACCTAAGCCTGTACTTAGGAGTTCGACGATAGATCGACTTGCAACGGCTCGTACACCTCAGAAGGTATCTGCAACTCAATCACCATCGAGTCAACCAAAAAAGCCGACCTCGAGAGCGAATGGCATTACCTCATCAGAAAAGTTCCCTAAATCTGACAGTAAGAAACTTATCTCGAACAAAGTAAAACCTTCTGATTTAAAACACGAGCACAAGAAATTGATTATGGCACTTTCTTCTGATTCTTATGGCCAGACAACAATGGATGGCAAGGAAGACGTAGTAGCATTGCCAGCTGAGTCGGCAGTACCGAATGCAACTCAACCAATCGAGAACGTCATCGATGATATCGAAGTTATCGAGGAGGTACATACTACCCATTCAGTCGAAAAAAATGATGAAACTTTTATTACTCAAGGCAATGATAGTTCAAACGACAAGGTTATCGATTTATCTAAAGCACCTTTAGTTCTTAATGAAGAAAAAATCGTTTCTAACGGTCACAACGAACATGCTTTGAAAAAGATGGTCGATTTTGCGGTGTTGTCTGATAAAGCCTTAGGTCCTGTAATCTTGAATACTGGTTTAGCCACACCCGAAATTTCCGAGATCAAAATCTCAACTCCTCCCTCAACTAACGAGATGGTCTCGGAGTACTCAACACACTCGAGGAAGAAATGGATTAGTGATGAAAACTCTTCCAAAGCACCTAAGGGGTTTAGAAAGCTACTTTTTTTCGGACATAAAAGCCGAAACACCGCCTTGGATTGA 3519 43.82 MDPRTRLNHALFQLTPTRTRCELVISANGGATEKLASGLLQPFISHLKCARDQISKGGYSITLRPIAGSNASWFTKGTLQRFVRFVSTPEVLERFVTIEKEIVQIENSMSTDAEENATVADWNSKRSSPTQRVKGDSDDINDDATLKDNPKIRLQRVLETRKAVLHKDQAMAYARASAAGYEMDYIEDLIAFAEAFGASRLREACINFMDLCKRKNEDKLWIDEIAAMQAFSQPAFSYSETSGIVLAGEENESNVNAHVSKSDSSASQGSSENNQVFSYDEKERRACVEGWLIDFVSYGKKYADGSLPKSAQMSMNGKAQVPTTWPNHPQYMHNFQGPLYPPYQGYLFPGMQVPPPYYPGNMQWPSNAEDLSLASDREPGGHRSSKSRRSKKKHSHKERTSEQEATTESGESSVDSESDEQSSDDKEQYSTEKIRKKKHGKKSSRTVVIRNINYITSKRNGEKGSHSEDDSSDEGEFIDGDSIKQQVEEAVGTLERRHKSTGRHQKKQNGYDNADGLNDSAERETNGISNNSEGEKISSPWDAFQNLLMSEREPEKSRELPSVQDQDGHEGRSPMLNLESERAPRQREVSSDSFVVTDRSSGNEGRTHIENFEAGDVANPINRRRESTYEELLYSQRGGESGSYVHSTASDFTNVSSRMKTQTEGDWFVSNPTNKSENQCQNVGPRVYDTDFSSSAQDHLYSEKNKKDVLADDSFMIQPRPLVDDQSDFQSRRDISMVSDIVGDAENEYIKQETSRDEKPATLGVSEPDDLYMMLDRDIATEHTVASWSPEMDYENNFSTIAKSKHSEIEADDGGDKSNKNKESGGKVPSKEARSKSLGGPLAKGKYDVQSRTRKPLSGSRTTVPKSKFEKEEETRKRMEELAIQRQKRIAERSSKPGVTKIEKQKSQSLVQEAKKSPKPVLRSSTIDRLATARTPQKVSATQSPSSQPKKPTSRANGITSSEKFPKSDSKKLISNKVKPSDLKHEHKKLIMALSSDSYGQTTMDGKEDVVALPAESAVPNATQPIENVIDDIEVIEEVHTTHSVEKNDETFITQGNDSSNDKVIDLSKAPLVLNEEKIVSNGHNEHALKKMVDFAVLSDKALGPVILNTGLATPEISEIKISTPPSTNEMVSEYSTHSRKKWISDENSSKAPKGFRKLLFFGHKSRNTALD 1172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9714954 9720992 + Carg14684-RA Car01g01020 141884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01020 1172 MobiDBLite consensus disorder prediction 965 981 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 372 623 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 511 545 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 549 588 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 446 460 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 131 145 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 255 276 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 865 900 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 805 830 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 114 145 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 114 130 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 928 964 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 805 981 - -
Car01g01020 1172 MobiDBLite consensus disorder prediction 461 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01020 - - - mcha:111010382 1652.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01020 Car09g00800 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01020 Car-Chr1:9714954 Car08g00950 Car-Chr8:6348445 3.63E-89 dispersed
Car01g01020 Car-Chr1:9714954 Car09g00800 Car-Chr9:4836322 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g264 . Blo03g01535 . Bda09g00491 . Bpe08g01035 . . . . Cma01g01195 Cma09g00882 Car01g01020 Car09g00800 Sed04g3168 Cpe06g00706 Cpe02g00714 Bhi09g03391 Tan01g4426 Cmetu07g0553 . Hepe01g1368 Mch11g1091 . Cla11g01780 Cam11g1844 Cec11g1865 Cco11g1875 Clacu11g2006 Cmu11g1815 Cre11g2223 Cone6ag0128 Cone9ag0152 . . . Csa04g02365 Chy07g00094 . . . . . . . Bma07g01191 . . Cmo01g01249 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003665 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 0 2 2 1 1 2 1 1 1 1 1 4 3 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01020 Car_Chr01 FPKM 61.564404 68.872452 3.448093 1.693694 9.266685 8.032262 10.351775 9.263426 10.065322 8.855047