Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01021 ATGAACAAATCCGTGAACGAAGACGACGAAGAAGAGTGTTTCTACGAGACCCTTGATCGCATTGCCTCCTCATGTTCTTGTTCAACTTCCAATTCCGATGACGATAGAGATTCGAACGCGAACTCCCCCAATTATGATTCCGAGCATCCTTTTCCAATACCCAAATTCCCAATGGCTGTTTCGAACTACGATATTTGGATCTCCGAGCCGGCCTCTGTGTTGGAACGCCGTGGCCGTCTTCTTCGAGAAATGGGTCTTAGCGGTGACCCTTCTCTCTCTCGGTCTAATACGGCTTTGGAATTGGATCATAGAGAAAAGGGTGCTGCCGATTTTGGTCGATCGGCGTCGTCGGAGTATTTGAGTCGTCAACGACAGCTTCCCCCTGTCATCATTCGCTCGAAATCGGATGGTTCGGCTGATTGCAACAGGAACACGAGCTCTTCACAAGCTTCCGGCAGTGATGCTGATAATCAGTGTAATTATTCGTCGTCTATTACTTCTCCTTCAATTCTTTCATTTCATTTGGTTGATGAGACCCCCACCACTTCATTTGCAAATAATCGTAATCGTTTAGTTGTTAAGTCCCTAAGCTGCAAGAGCGAGGGAGCTTCATCGGTTGCTTATATTGCTTCACAGCATAAGCCACCTTCTGGGAAAAATTGTAGATGGGCAGATGAGATTCGAAGCGATTCAATGGTTTTGAATACCAATTCTGATCCTAATCGATCGGCATTGTCTCAGAATGGCGAGAATAGACGAGAGATTAGTGAGGATTCGGGTTGTTCTACGAGTGGAATGGTCGATGAGAAAGTCTGCACTATCAAGGATCTTGACAATGGGAAAGAGTTTGTTGTGAATGAGATTAGTGAAAATGGTATGTGGAACAAGCTCAAGGAAGTGGGCACTGGGAGACAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGGCATTCACCCATTGTTCAAGAACTCATGAGGCGACAGAACGTGGAGGATGGTTGTAATGGTTGTAACGAAAACGTTGATTTAAATGTGAATGGGGATATCGGTAGCGGTTCGAAATTGAAAAAGAAAGGAGGTTGGTTGAAGAGTATAAAGAATGTTGCTAGCACGGTGAAAGGTCAAAAGGAGAGACGTAGCAGTGACGAGAGGGATACTTCATCTGAGAAAGGTGGAAGGAGGTCAAGCTCTGCAACAGATGATAGCCAAGATGTTTCGTTTCATGGACCGGAGAGAGTACGAGTTCGGCAGTATGGAAAGTCAAGTAAAGAATTGTCTGCACTCTACAAGAGCCAAGAGATACAAGCACACAGTGGGTCAATATGGACCATTAAGTTCAGTTTGGATGGGAAGTACCTTGCAAGTGCAGGAGAGGACCGTATCATTCATGTTTGGCAGGTCGTCGAGTCGGAGAAGAAGGGCGAGCTACTGATGGAGAAACCCGAAGAAGGGAATTTGAGTTTCTTACTTACAGCTAACGAATCACCAGAGCCGACTTCGTTATCTCCAAATGTGGATAGCCATCATGAGAAGAAGAGAAGAGGGAGATCTTCTATTAGCCGAAAATCAGTGAGCTTGGAGAATGTTATAGTACCTGAGACTGTATTTGGGCTTTCCGAAAAACCCGTCTGTTCATTTGAGGGGCATCTCGATGTCGTGCTTGACCTTTCTTGGTCCAAATCGCAGCATTTGCTCTCATCTTCAATGGACAAAACCGTGAGGCTCTGGCACTTGTCAAGCAAATCCTGTTTGAAAATCTTTTCCCACAGTGATTATGCTAATAGCAAGTTTGTTTCTCACGTGTACCGTGCCACAGTAACGTGCATCCAGTTTAATCCTATCGACGATAGATACTTCATTAGTGGATCATTAGACGCTAAAGTTCGTATATGGAGTATACCAGATCGTCAAGTCGTTGATTGGAGCGACTTGCATGAGATGGTGACCGCTGCTTGCTATACGCCTGATGGCAAGGGTGCTTTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCTGAGAACAAGATGCAGCAAAAAAGTGAGATAAATCTGCAGAACAAGAAGAAGAAATCTAGTCACAAGAAAATTACTGGATTCCAGTTTGCTCCAGGAAGTTCGTCAGAAGTGCTGATTACATCTGCAGATTCACGCGTTCGAGTGGTCGATGGTGTTGATCTCGTCTATAGGTTTAAAGGGTTCCGAAATACGAACAGCCAAATCTCGGCCTGTCTTTCATCGAACGGCAGGTATGTGATATCAGCGAGTGAGGATTCACATGTGTACATATGGAAGCACGAAGCTGATTCTCGACCCAGTAGGAGCAAGGGAGTGACAGTCGTTCGATCATACGAGCATTTCCACTGTCAAGACGTCTCCGTTGCTATTCCTTGGCCTGGTTTGGGCGACACATTGGAACTTCAAGACGATTATCATGGAGATGACAACACAATCGAAAACCATCTCGACGAAATCTCCTCTGCTAACCATCCTCCTACACCTGTGGAAGTAGCAAACGGCAGCGAGGATTCACTCTCGGCATCTGGTTGCACGAACAGCCCTCTCCACGGAACACTTTCGAGTGCCACCAATAGCTACTTCTTTGACAGAATCTCAGCAACATGGCCGGCGGAAAAGCTGATTGTGAATACTCACAACAACCGTAGTCCTCATTCCAGTGAAATGTTTCAAGGATCATCAGCATGGGGTATGGTGATTGTGACTGCTGGGCTTCGAGGCGAAATCCGAACGTTCCAGAACTTCGGATTTCCAGTTAAGATTTAA 2790 45.7 MNKSVNEDDEEECFYETLDRIASSCSCSTSNSDDDRDSNANSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRGRLLREMGLSGDPSLSRSNTALELDHREKGAADFGRSASSEYLSRQRQLPPVIIRSKSDGSADCNRNTSSSQASGSDADNQCNYSSSITSPSILSFHLVDETPTTSFANNRNRLVVKSLSCKSEGASSVAYIASQHKPPSGKNCRWADEIRSDSMVLNTNSDPNRSALSQNGENRREISEDSGCSTSGMVDEKVCTIKDLDNGKEFVVNEISENGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNGCNENVDLNVNGDIGSGSKLKKKGGWLKSIKNVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGELLMEKPEEGNLSFLLTANESPEPTSLSPNVDSHHEKKRRGRSSISRKSVSLENVIVPETVFGLSEKPVCSFEGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYANSKFVSHVYRATVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVLITSADSRVRVVDGVDLVYRFKGFRNTNSQISACLSSNGRYVISASEDSHVYIWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGLGDTLELQDDYHGDDNTIENHLDEISSANHPPTPVEVANGSEDSLSASGCTNSPLHGTLSSATNSYFFDRISATWPAEKLIVNTHNNRSPHSSEMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPVKI 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9728856 9733252 + Carg14685-RA Car01g01021 141885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01021 929 MobiDBLite consensus disorder prediction 233 264 - -
Car01g01021 929 MobiDBLite consensus disorder prediction 370 418 - -
Car01g01021 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 633 IPR001680 GO:0005515
Car01g01021 929 MobiDBLite consensus disorder prediction 24 52 - -
Car01g01021 929 MobiDBLite consensus disorder prediction 826 851 - -
Car01g01021 929 MobiDBLite consensus disorder prediction 85 159 - -
Car01g01021 929 MobiDBLite consensus disorder prediction 137 159 - -
Car01g01021 929 MobiDBLite consensus disorder prediction 493 519 - -
Car01g01021 929 MobiDBLite consensus disorder prediction 372 397 - -
Car01g01021 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 434 467 - -
Car01g01021 929 MobiDBLite consensus disorder prediction 233 250 - -
Car01g01021 929 MobiDBLite consensus disorder prediction 24 46 - -
Car01g01021 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 580 - -
Car01g01021 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 586 IPR001680 GO:0005515
Car01g01021 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 434 475 IPR001680 GO:0005515
Car01g01021 929 Pfam WD domain, G-beta repeat 541 576 IPR001680 GO:0005515
Car01g01021 929 Pfam WD domain, G-beta repeat 741 767 IPR001680 GO:0005515
Car01g01021 929 Pfam WD domain, G-beta repeat 599 632 IPR001680 GO:0005515
Car01g01021 929 Pfam WD domain, G-beta repeat 433 465 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01021 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1593.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01021 Car-Chr1:9728856 Car03g00377 Car-Chr3:4569986 2.80E-06 dispersed
Car01g01021 Car-Chr1:9728856 Car02g00680 Car-Chr2:5067072 1.38E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01021 Car_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0