Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01024 ATGTTAGCCATTTTTCACAAAACTTTCGCACACCCACCTGAGGAACTTAACAGCCCTGCATCTTTCAGTGGCTCTAAGACGCCTAAACTTCCTAAAGAAACAGTCAAAGAATTTATTTCTCGAAACCCTCACAATACTTTCTCTGTTAACTTCGGTGAGGCGGCTGTTCTTGCTTATGTTCCTCCTGATCGTCCTTCCTCTCTCAGCCAAAGGCTGTTCTGTGGATTTGATGACATATACTGTCTGTTCTTGGGAAGTTTGAACAATCTATGTGCACTCAACAAGCAATATGGTCTATCAAAAAGCTCAAATGAGGCCATGTTTTTAATTGAGGCCTATAGAACACTTAGGGACAGAGGTCCTTACCCAGCTGATCAGGTCCTTAAGGAGCTAGATGGCAGCTTTGCCTTTGTTGTTTATGACAGAAGGGCTGGAGCTGTTTTTGCTGCCTTGGGGGCAGATGGAGAAGTGAAGCTCTATTGGGGAATTGCAGCAGATGGGTCAGTGGTGATTTCAGATGATATGGATGTCATAAAAGAAGGATGTGCAAAATCATATGCACCCTTCCCACCTGGATGTATGTTCCATAGTGAAGGAGGTCTAATGAGCTTTGAGCATCCATTGCACAAGATGAAGCCAATGCCTAGAATTGATAGTGAAGGAGTCATGTGTGGAGCTAACTTCAAGGTTGATGTGTATACAAGAGTCAACAGCATTCCAAGAAGAGGCAGTGAAGCTAATTGGGCCGAATGGGATACAAACTAG 765 43.79 MLAIFHKTFAHPPEELNSPASFSGSKTPKLPKETVKEFISRNPHNTFSVNFGEAAVLAYVPPDRPSSLSQRLFCGFDDIYCLFLGSLNNLCALNKQYGLSKSSNEAMFLIEAYRTLRDRGPYPADQVLKELDGSFAFVVYDRRAGAVFAALGADGEVKLYWGIAADGSVVISDDMDVIKEGCAKSYAPFPPGCMFHSEGGLMSFEHPLHKMKPMPRIDSEGVMCGANFKVDVYTRVNSIPRRGSEANWAEWDTN 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9740261 9741473 - Carg14688-RA Car01g01024 141888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01024 254 SMART DUF3700_2 2 230 IPR024286 -
Car01g01024 254 Pfam Aluminium induced protein 2 230 IPR024286 -
Car01g01024 254 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 58 205 IPR029055 -
Car01g01024 254 PANTHER BNAA08G14100D PROTEIN 1 249 - -
Car01g01024 254 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS 1 249 IPR044828 -
Car01g01024 254 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 74 198 IPR029055 -
Car01g01024 254 CDD Wali7 2 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01024 - - - csv:101207830 472.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01024 Car09g00791 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01024 Car-Chr1:9740261 Car07g00213 Car-Chr7:1183364 7.12E-124 dispersed
Car01g01024 Car-Chr1:9740261 Car09g00791 Car-Chr9:4658124 1.25E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g258 Blo03g00646 . Bda07g00290 . . . . . . . Cma01g01199 Cma09g00879 Car01g01024 Car09g00791 Sed05g2577 Cpe06g00702 Cpe02g00710 Bhi09g03397 Tan01g4415 Cmetu07g1424 . Hepe01g1373 Mch11g1086 . Cla11g01776 Cam11g1840 Cec11g1861 Cco11g1871 Clacu11g2002 Cmu11g1811 Cre11g2219 Cone6ag0133 Cone9ag0158 . . Lsi04g01321 Csa04g02359 Chy07g00088 . . . . . Bpe11g00488 Bpe01g00417 . . . Cmo01g01253 Cmo09g00868 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003847 1 1 4 2 2 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01024 Car_Chr01 FPKM 6.152405 7.037502 6.800666 7.317188 14.284285 16.581726 16.40457 9.962676 9.300155 9.9122