Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01028 ATGGCTGAAAATGCTGACCCAGAGGGGCGATCTCTTGCTTTGACGCCCACATGGTCTGTTGCTTCTGTATTGACAATTTTTGTGGCTGTTTCATTGCTTGTTGAGCGGTCCATCCATAGGCTAAGCTCTTGGCTGGGAAAAACTCATAGAAAGCCTTTATTTGAGGCAGTGGAGAAAATGAAAGAAGAGTTAATGCTGCTTGGATTCATTTCTTTGCTTCTGACAGCAACGTCTAGCGTGATATCGAATATCTGCGTTCCATCCAAGTTTTATGATACCTCTTTCACTCCATGCACCCAGTCAGAGATTGATGAACAAAATGAGGATAATAGTTCATCTGAGAAGCGAAAGCTATATATGGTGTCTGTTTTCCCACATTTGTATAGGAGGATGCTAAGTGTGAACAAAAATACTTGCAAAGAGGGTCATGAGCCATTTGTATCTTATGAAGGTCTCGAACAATTGCATCGCTTTATCTTTATAATGGCAGTAACTCATATATTTTATAGTTGCTTGACAATGTTGCTGGCAATTGTGAAGATCCACAGTTGGAGAGTATGGGAAAATGAAGCTCACATGGACCACCATGATTCATTCAGTGATACTACGAGAAAAAAGATAATGCAGAGACAATCTACCTTTGTACAATATCACACCTCCAATCCTTTAACCAGGAAGAGTGTTCTTATTTGGATGACATGTTTCTTTCGGCAATTTGGGCGTTCTGTTGTTCGTTCTGACTACCTTGCACTTCGCAAAGGATTCATCATGAATCACAATCTCTCATCAAAATATGATTTCCATAGCTACATGGTTCGTTCGATGGAAGAAGAATTCCAGAGGATAGTTGGTGTGAGCGGTCCACTATGGGGATTTGTTGTTGCGTTTCTCCTGTTTAACGTGAAAGGGTCTAATCTATACTTTTGGATAGCAACTATTCCTGTTACTCTTGTTCTTTTAGTAGGCACAAAGTTACAGCATATTATTGCAACTTTGACATTGGAGAATGCTGGTATAACCGGCTTCGTTTCTGGAGCAAAGCTGAGGCCTCGTGACGATCTTTTCTGGTTTAAGAAGCCTGAACTCCTGTTGTCCTTGATCCATTTTGTTCTTTTCCAGAATGCTTTTGAATTGGCTTCGTTCTTCTGGTTCTGGTGGCAATTTGGATACAGTTCTTGCTTCATTAGTAATCATCTGCTTGTCTATGTAAGGCTGATCTTGGGGTTTGCTGGACAGTTTCTTTGCAGTTATAGTACCTTGCCCTTGTATGCACTGGTTACTCAGATGGGAACAAACTACAAGGCTGCCTTAATTCCACAAAGGATAAGAGAAACAATCCATGGGTGGGGTAAGTCAGCTAGAAGGAAGAGAAGGCTCCGGATATTTACTGATGATGCCACATTCAACACAGAAACAAGCACCGTGATGTCACTGGAGGACGACGACAATCCTGATACACCCAAAGTTGTCAATGGCTATGCCGAAATCGAGTTGCAGCCACCTACTCCAGTGAATGCATCCCTCTCTGTTGCTAATGATACATCACGTGGGGTAAAAACCGGCCTTCAACCCTCTCGGTCCCTTTCTTCACCTGTCGCTCAAAACTTCGATATCGAAAACTCTTTAAGAAGCTCATCTATGCCGGTACGAAGATAG 1656 42.09 MAENADPEGRSLALTPTWSVASVLTIFVAVSLLVERSIHRLSSWLGKTHRKPLFEAVEKMKEELMLLGFISLLLTATSSVISNICVPSKFYDTSFTPCTQSEIDEQNEDNSSSEKRKLYMVSVFPHLYRRMLSVNKNTCKEGHEPFVSYEGLEQLHRFIFIMAVTHIFYSCLTMLLAIVKIHSWRVWENEAHMDHHDSFSDTTRKKIMQRQSTFVQYHTSNPLTRKSVLIWMTCFFRQFGRSVVRSDYLALRKGFIMNHNLSSKYDFHSYMVRSMEEEFQRIVGVSGPLWGFVVAFLLFNVKGSNLYFWIATIPVTLVLLVGTKLQHIIATLTLENAGITGFVSGAKLRPRDDLFWFKKPELLLSLIHFVLFQNAFELASFFWFWWQFGYSSCFISNHLLVYVRLILGFAGQFLCSYSTLPLYALVTQMGTNYKAALIPQRIRETIHGWGKSARRKRRLRIFTDDATFNTETSTVMSLEDDDNPDTPKVVNGYAEIELQPPTPVNASLSVANDTSRGVKTGLQPSRSLSSPVAQNFDIENSLRSSSMPVRR 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9763379 9771206 + Carg14692-RA Car01g01028 141892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01028 551 PANTHER MLO-LIKE PROTEIN 1 4 514 IPR004326 GO:0006952|GO:0016021
Car01g01028 551 PANTHER MLO-LIKE PROTEIN 11 4 514 - -
Car01g01028 551 MobiDBLite consensus disorder prediction 504 551 - -
Car01g01028 551 Pfam Mlo family 10 463 IPR004326 GO:0006952|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01028 K08472 MLO; mlo protein - csv:101207170 1003.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01028 Car04g00505 CCT
Car01g01028 Car09g00788 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01028 Car-Chr1:9763379 Car17g00565 Car-Chr17:5237572 5.88E-126 dispersed
Car04g00505 Car-Chr4:2849214 Car01g01028 Car-Chr1:9763379 1.01E-143 transposed
Car09g00788 Car-Chr9:4638469 Car01g01028 Car-Chr1:9763379 0 transposed
Car15g00303 Car-Chr15:1635960 Car01g01028 Car-Chr1:9763379 0 transposed
Car16g01169 Car-Chr16:9939947 Car01g01028 Car-Chr1:9763379 3.63E-82 transposed
Car16g01170 Car-Chr16:9944186 Car01g01028 Car-Chr1:9763379 2.87E-44 transposed
Car01g01028 Car-Chr1:9763379 Car09g00787 Car-Chr9:4636887 4.40E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g246 Blo03g00649 Blo03g01542 Bda07g00291 . . Bpe08g01029 . . . . Cma01g01204 Cma09g00875 Car01g01028 Car09g00788 Sed04g1597 Cpe06g00699 . Bhi09g03403 Tan01g0784 Cmetu04g0308 . . . . Cla11g01772 Cam11g1837 Cec11g1858 Cco11g1866 Clacu11g1998 Cmu11g1807 Cre11g2216 Cone6ag0137 Cone9ag0162 . . Lsi04g01324 Csa04g02353 Chy07g00085 . . . . . Bpe11g00487 . Bma07g01182 . . Cmo01g01256 Cmo09g00864 Cma04g00535 . Car04g00505 . . . . . . . . . . Cla05g01024 Cam05g1118 Cec05g1128 Cco05g1118 Clacu05g1109 Cmu05g1058 Cre05g1133 . . Chy06g01139 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g01028 CCT,CST 5 548 MLO family AT5G53760 69.9 6.8e-214 740.7
Car15g00303 . 2 553 MLO family AT5G53760 68.9 8.9e-214 740.3
Car09g00788 CCT,CST 10 325 MLO family AT5G53760 60.4 9.2e-118 421.4
Car01g00490 . 10 479 MLO family AT3G45290 53.8 5.4e-138 488.4
Car01g01028 CCT,CST 1 551 MLO family AT1G26700 67.6 2.9e-209 725.3
Car15g00303 . 3 553 MLO family AT1G26700 67.8 2.9e-209 725.3
Car09g00788 CCT,CST 1 329 MLO family AT1G26700 58.2 9.8e-117 417.9
Car18g00811 . 7 495 MLO family AT2G39200 66.8 3.3e-192 668.7
Car13g00156 CCT,ECH 8 536 MLO family AT2G39200 63.7 5.7e-192 667.9
Car20g00418 CCT,ECH 8 509 MLO family AT2G39200 67.2 3.1e-190 662.1
Car17g00565 . 8 503 MLO family AT2G39200 66.1 2.7e-186 649.0
Car04g01437 . 7 557 MLO family AT2G39200 60.9 1.1e-184 643.7
Car20g00418 CCT,ECH 8 414 MLO family AT1G61560 67.8 2.2e-161 565.8
Car17g00565 . 8 414 MLO family AT1G61560 67.6 3.2e-160 562.0
Car13g00156 CCT,ECH 8 416 MLO family AT1G61560 66.9 7.8e-159 557.4
Car18g00811 . 7 404 MLO family AT1G61560 65.2 2.6e-154 542.3
Car04g01437 . 7 440 MLO family AT1G61560 60.4 5.2e-147 518.1
Car03g00574 CST 30 427 MLO family AT1G61560 52.2 7.4e-117 417.9
Car07g00331 CST 28 424 MLO family AT1G61560 52.7 1.4e-115 413.7
Car06g00140 . 30 424 MLO family AT1G61560 50.2 8.7e-110 394.4
Car07g00331 CST 16 492 MLO family AT2G17430 62.4 1.1e-168 590.5
Car03g00574 CST 12 495 MLO family AT2G17430 60.8 3.1e-168 589.0
Car06g00140 . 30 494 MLO family AT2G17430 62.2 3.6e-156 548.9
Car17g00565 . 7 456 MLO family AT2G17430 50.4 2.0e-122 436.8
Car05g00852 . 2 412 MLO family AT2G17430 51.1 1.8e-118 423.7
Car03g00574 CST 2 572 MLO family AT2G17480 62.4 1.5e-195 679.9
Car07g00331 CST 7 569 MLO family AT2G17480 62.5 2.8e-194 675.6
Car06g00140 . 5 577 MLO family AT2G17480 58.0 9.7e-179 624.0
Car05g00852 . 12 397 MLO family AT2G17480 55.7 2.0e-131 466.8
Car13g00156 CCT,ECH 8 457 MLO family AT2G17480 52.7 4.7e-125 445.7
Car20g00418 CCT,ECH 8 461 MLO family AT2G17480 50.2 8.9e-124 441.4
Car07g00331 CST 28 388 MLO family AT1G42560 59.9 3.1e-122 435.6
Car03g00574 CST 30 391 MLO family AT1G42560 58.0 1.1e-119 427.2
Car06g00140 . 30 389 MLO family AT1G42560 56.7 3.6e-110 395.6
Car05g00852 . 12 313 MLO family AT1G42560 54.3 4.4e-100 362.1
Car08g00870 . 6 415 MLO family AT4G24250 54.5 1.2e-116 417.2
Car17g00043 . 6 435 MLO family AT4G24250 51.3 4.5e-111 398.7
Car03g00574 CST 7 392 MLO family AT5G65970 64.2 5.3e-143 505.0
Car07g00331 CST 8 389 MLO family AT5G65970 63.6 5.5e-140 495.0
Car06g00140 . 29 389 MLO family AT5G65970 65.7 2.2e-136 483.0
Car20g00418 CCT,ECH 2 379 MLO family AT5G65970 51.6 1.2e-105 380.9
Car17g00565 . 2 379 MLO family AT5G65970 50.3 1.4e-103 374.0
Car03g00574 CST 22 475 MLO family AT2G33670 59.9 7.4e-156 547.7
Car07g00331 CST 28 472 MLO family AT2G33670 61.1 9.7e-156 547.4
Car05g00852 . 2 475 MLO family AT2G33670 53.3 2.1e-142 503.1
Car06g00140 . 30 472 MLO family AT2G33670 57.0 1.7e-136 483.4
Car13g00156 CCT,ECH 6 482 MLO family AT2G33670 50.1 4.3e-127 452.2
Car18g00811 . 64 520 MLO family AT1G11310 62.8 3.2e-170 595.5
Car13g00156 CCT,ECH 63 511 MLO family AT1G11310 65.7 4.7e-166 581.6
Car20g00418 CCT,ECH 63 518 MLO family AT1G11310 62.7 1.5e-164 576.6
Car17g00565 . 63 518 MLO family AT1G11310 61.9 9.2e-162 567.4
Car04g01437 . 64 604 MLO family AT1G11310 55.4 1.2e-158 557.0
Car07g00331 CST 83 500 MLO family AT1G11310 50.1 7.0e-109 391.7
Car08g00870 . 1 498 MLO family AT2G44110 59.8 9.6e-164 573.9
Car17g00043 . 1 524 MLO family AT2G44110 57.6 6.2e-163 571.2
Car08g00870 . 1 506 MLO family AT4G02600 72.8 1.4e-213 739.6
Car17g00043 . 1 505 MLO family AT4G02600 73.5 3.2e-210 728.4
Car04g00505 CCT 4 502 MLO family AT1G11000 67.5 2.1e-194 676.0
Car16g01169 . 40 332 MLO family AT1G11000 52.6 1.4e-78 291.2
Car16g01170 . 20 179 MLO family AT1G11000 59.9 8.5e-47 185.7
Car08g00870 . 1 506 MLO family AT4G02600 72.8 1.4e-213 739.6
Car17g00043 . 1 505 MLO family AT4G02600 73.5 3.2e-210 728.4
Car18g00811 . 64 520 MLO family AT1G11310 62.8 3.2e-170 595.5
Car13g00156 CCT,ECH 63 511 MLO family AT1G11310 65.7 4.7e-166 581.6
Car20g00418 CCT,ECH 63 518 MLO family AT1G11310 62.7 1.5e-164 576.6
Car17g00565 . 63 518 MLO family AT1G11310 61.9 9.2e-162 567.4
Car04g01437 . 64 604 MLO family AT1G11310 55.4 1.2e-158 557.0
Car07g00331 CST 83 500 MLO family AT1G11310 50.1 7.0e-109 391.7
Car01g00490 . 10 479 MLO family AT3G45290 53.8 5.4e-138 488.4
Car04g00505 CCT 4 502 MLO family AT1G11000 67.5 2.1e-194 676.0
Car16g01169 . 40 332 MLO family AT1G11000 52.6 1.4e-78 291.2
Car16g01170 . 20 179 MLO family AT1G11000 59.9 8.5e-47 185.7
Car03g00574 CST 22 475 MLO family AT2G33670 59.9 7.4e-156 547.7
Car07g00331 CST 28 472 MLO family AT2G33670 61.1 9.7e-156 547.4
Car05g00852 . 2 475 MLO family AT2G33670 53.3 2.1e-142 503.1
Car06g00140 . 30 472 MLO family AT2G33670 57.0 1.7e-136 483.4
Car13g00156 CCT,ECH 6 482 MLO family AT2G33670 50.1 4.3e-127 452.2
Car20g00418 CCT,ECH 8 414 MLO family AT1G61560 67.8 2.2e-161 565.8
Car17g00565 . 8 414 MLO family AT1G61560 67.6 3.2e-160 562.0
Car13g00156 CCT,ECH 8 416 MLO family AT1G61560 66.9 7.8e-159 557.4
Car18g00811 . 7 404 MLO family AT1G61560 65.2 2.6e-154 542.3
Car04g01437 . 7 440 MLO family AT1G61560 60.4 5.2e-147 518.1
Car03g00574 CST 30 427 MLO family AT1G61560 52.2 7.4e-117 417.9
Car07g00331 CST 28 424 MLO family AT1G61560 52.7 1.4e-115 413.7
Car06g00140 . 30 424 MLO family AT1G61560 50.2 8.7e-110 394.4
Car07g00331 CST 16 492 MLO family AT2G17430 62.4 1.1e-168 590.5
Car03g00574 CST 12 495 MLO family AT2G17430 60.8 3.1e-168 589.0
Car06g00140 . 30 494 MLO family AT2G17430 62.2 3.6e-156 548.9
Car17g00565 . 7 456 MLO family AT2G17430 50.4 2.0e-122 436.8
Car05g00852 . 2 412 MLO family AT2G17430 51.1 1.8e-118 423.7
Car03g00574 CST 2 572 MLO family AT2G17480 62.4 1.5e-195 679.9
Car07g00331 CST 7 569 MLO family AT2G17480 62.5 2.8e-194 675.6
Car06g00140 . 5 577 MLO family AT2G17480 58.0 9.7e-179 624.0
Car05g00852 . 12 397 MLO family AT2G17480 55.7 2.0e-131 466.8
Car13g00156 CCT,ECH 8 457 MLO family AT2G17480 52.7 4.7e-125 445.7
Car20g00418 CCT,ECH 8 461 MLO family AT2G17480 50.2 8.9e-124 441.4
Car07g00331 CST 28 388 MLO family AT1G42560 59.9 3.1e-122 435.6
Car03g00574 CST 30 391 MLO family AT1G42560 58.0 1.1e-119 427.2
Car06g00140 . 30 389 MLO family AT1G42560 56.7 3.6e-110 395.6
Car05g00852 . 12 313 MLO family AT1G42560 54.3 4.4e-100 362.1
Car03g00574 CST 7 392 MLO family AT5G65970 64.2 5.3e-143 505.0
Car07g00331 CST 8 389 MLO family AT5G65970 63.6 5.5e-140 495.0
Car06g00140 . 29 389 MLO family AT5G65970 65.7 2.2e-136 483.0
Car20g00418 CCT,ECH 2 379 MLO family AT5G65970 51.6 1.2e-105 380.9
Car17g00565 . 2 379 MLO family AT5G65970 50.3 1.4e-103 374.0
Car01g01028 CCT,CST 5 548 MLO family AT5G53760 69.9 6.8e-214 740.7
Car15g00303 . 2 553 MLO family AT5G53760 68.9 8.9e-214 740.3
Car09g00788 CCT,CST 10 325 MLO family AT5G53760 60.4 9.2e-118 421.4
Car18g00811 . 7 495 MLO family AT2G39200 66.8 3.3e-192 668.7
Car13g00156 CCT,ECH 8 536 MLO family AT2G39200 63.7 5.7e-192 667.9
Car20g00418 CCT,ECH 8 509 MLO family AT2G39200 67.2 3.1e-190 662.1
Car17g00565 . 8 503 MLO family AT2G39200 66.1 2.7e-186 649.0
Car04g01437 . 7 557 MLO family AT2G39200 60.9 1.1e-184 643.7
Car08g00870 . 6 415 MLO family AT4G24250 54.5 1.2e-116 417.2
Car17g00043 . 6 435 MLO family AT4G24250 51.3 4.5e-111 398.7
Car01g01028 CCT,CST 1 551 MLO family AT1G26700 67.6 2.9e-209 725.3
Car15g00303 . 3 553 MLO family AT1G26700 67.8 2.9e-209 725.3
Car09g00788 CCT,CST 1 329 MLO family AT1G26700 58.2 9.8e-117 417.9
Car08g00870 . 1 498 MLO family AT2G44110 59.8 9.6e-164 573.9
Car17g00043 . 1 524 MLO family AT2G44110 57.6 6.2e-163 571.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001851 1 6 2 2 2 1 3 2 1 2 2 2 3 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 4 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01028 Car_Chr01 FPKM 1.838488 2.650508 0.0 0.0 0.036258 0.0 0.0 0.0 0.0 0.0