Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01030 ATGGATCAAACCTATTCTTCACCTGAGGCATACTTAGAGTCTGAACAAGATGTCTCTCTTAAGCAAAACTGGAAATCTATGTCAGCCCAGTCAACTGTATCCGAAGATGCAAATGGTTGCTTCGATTGCAACATTTGCTTGGACTCTGCAGCTGACCCTGTTGTCACCCTCTGTGGTCACCTCTTCTGCTGGCCCTGCATTTACAAATGGTTTCATGTACAAATCTCCAGCAACGAAACCGAAAACACACACAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCCTCTTTGGTTCCCCTCTATGGCCGTGGCAAGTCATATTCAGATTCTGAATCCAAGAAGTCTCATTTGGGTATAACCGTACCTCGAAGGCCACCACCGTCCATGAACACCCCGCCCCATTCTAATGCTGCCTCTGCATTGCATCCTAGTGAGGAACTTCATCCAAATTATATCCGCTCGCCATTGCACCGGATCTATCACCAACAATATTTCCCTCAGGCATATGGTAACTTTGCCCCATACGCACCATCTTATCTCGGCAATGCCATGGTAACAAGTCTGCTAAACCCGACGATTGGGTTGATAGGAGAAACGGTTTACACAAGAATTTTTGGTAGTGCAGATGGGAACTTGTTGCCTTACCCGCCTTACAACCACTCGGTCGCAGGGAATGTTGGCACCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTGAATAGAGTTTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTGTTGTTTTGA 783 45.98 MDQTYSSPEAYLESEQDVSLKQNWKSMSAQSTVSEDANGCFDCNICLDSAADPVVTLCGHLFCWPCIYKWFHVQISSNETENTHNCPVCKASITPSSLVPLYGRGKSYSDSESKKSHLGITVPRRPPPSMNTPPHSNAASALHPSEELHPNYIRSPLHRIYHQQYFPQAYGNFAPYAPSYLGNAMVTSLLNPTIGLIGETVYTRIFGSADGNLLPYPPYNHSVAGNVGTRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9780746 9781528 - Carg14694-RA Car01g01030 141894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01030 260 MobiDBLite consensus disorder prediction 107 142 - -
Car01g01030 260 SUPERFAMILY RING/U-box 23 96 - -
Car01g01030 260 ProSiteProfiles Zinc finger RING-type profile. 43 90 IPR001841 -
Car01g01030 260 SMART ring_2 43 89 IPR001841 -
Car01g01030 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 3 260 - -
Car01g01030 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 104 IPR013083 -
Car01g01030 260 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Car01g01030 260 CDD RING-HC_AtRMA_like 41 91 - -
Car01g01030 260 Pfam Zinc finger, C3HC4 type (RING finger) 43 89 IPR018957 GO:0046872
Car01g01030 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 260 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01030 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - csv:101206686 436.032
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01030 Car09g00785 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01030 Car-Chr1:9780746 Car07g00207 Car-Chr7:1150522 1.07E-59 dispersed
Car01g01030 Car-Chr1:9780746 Car13g00532 Car-Chr13:7308863 9.15E-48 wgd
Car01g01030 Car-Chr1:9780746 Car09g00785 Car-Chr9:4625193 6.15E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g241 . . Bda07g00293 . . Bpe02g01905 Bma10g00503 . . . . Cma09g00872 Car01g01030 Car09g00785 Sed06g0407 Cpe06g00695 Cpe02g00705 Bhi09g03405 Tan01g4405 Cmetu07g2305 . Hepe01g1379 Mch11g1077 . Cla11g01769 . . Cco11g1863 . . Cre11g2213 Cone3ag1414 Cone10ag1343 . Cone12ag1456 Lsi04g01328 Csa04g02351 Chy07g00084 . . . . . Bpe11g00486 Bpe03g00833 . Bma14g00232 . Cmo01g01258 Cmo09g00861 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011682 1 1 0 2 2 0 2 1 0 0 1 0 0 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01030 Car_Chr01 FPKM 13.643098 18.231621 9.681035 7.29222 8.220601 4.809951 6.470373 7.568008 7.446687 8.070343