Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01033 ATGTGTGTGTATTTGTTTATATGGAGCTTTAAGTGGATAACAATGGAGGCATCATTTGATCACCTTAAGAACCAGGATGATTTATCTGGGGTTTGTGAGGAAGATATACTAGCTGACCCTTATGTGCCTTCTCTTAAATGGAGTGATATTAGCTTGAGGCAATGGTTGGATAAGCCAGAAAGATCTGTGGATGCTTTAGAGTGCCTTCATATATTTAGCCAAATAGTGGAGATTGTTAACATTGCTCATGCTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCATGCTTTGTTATGTCCTCTTTCAACCATGTAACCTTTATTGAGTCGGCATCGTGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCCTCAATGGTCAAACTGTAGAGGTTATAAAAGCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTTCGATCTATTATGACCCCGATAAATGCTTTGTCGGAAACTAGTTGTATGCAGTCGAGTTCAGTGTATGCAGCTCAAATATCATTGAATGAAGGGTCTGGAGAATGTAGAAAAATGGATGGACGACATGTCGAAGAAGCTGAAGATAAGATGCAATCGTTTCCAATGAAACAGATATTAGCCATGGAGACTACTTGGTACTCTAGCCCGGAAGAGGCGTCTGGTGGTCCAAGTTCCAGTGCTTCAGATATCTACCGGTTAGGTGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAAAAGAGTAGAACTATGTCGAGCTTGAGGCATCGAGTGCTTCCTCCTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCCGAGCCAAGTAATCGACCTAAGCTAAGTGATATATTGCAGAGTGAATTTCTCAATGAGCCAAGAGATGACCTTGAAGAACGTGAAGCAGCAATCGAGCTTAGGAAAAGAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTTCTCATAAGTTGCAAGATACTATTTCTTTTCTTCGCAGTGATATCGAACAAGTTATGATGCACCAAACTAATTTTAAAAGAAAAAGTAGGTCATGCCCAGATCTCGAAAAGGACAATCATTTGCCTTTAAATCTCTCTTCAACGACTCGCGTTGAAAATACTGATTCTGCTGGCTTGGGATCAAGGAAACGATTTAGGCCAGGAATTTTGATACCCGATTTAGAAGTATGTGGTGATAATCTTGATGACGATCAAAACGAACAAGGTGTACTTTTTAAGTATTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTAGCTTATTTTTTGATGAGAGGTAGAGTAAACAAGCCGTCAAGGAGGCAGTTCGTTAAACACTCATCGATAAGTAGCGAAGGTAGAGGGTCCATTGTTTTGAATGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATAGACAAGGTGGATGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAGGTCAAGGCAGACTTGAAACAAGGAGATCTATTGAATTCCTCCAATCTAGTATGTTCTCTCGGTTTTGACCGTGATGGAGAATTCTTTGCCACGGCTGGTGTTAATAGGAAAATCAAAGTGTTTGGATACGAATCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAAGTCGAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCTAGTAATTTCGAGGGTGTAGTGCAGGTATGGGATGTCACAAGAAGTCAAGTAGTCACTGAAATGGAAGAACACGAGAGGCGCGTATGGTCGATTGACTTCTCATCGGCCGATCCAACAATTTTGGCTAGCGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGGTATGAGTATCGGCACGATCAGAACAAAAGCCAATGTCTGCTGCGTACAATTTCCTGTGGATTCTGGTCGGTCCCTTGCGTTCGGTTCAGCCGATCACAAAATTTATTACTACGACATGCGGAATATTAGAGTTCCTTTGTGCACCTTCACTGGACACAGCAAAACTGTGAGTTACGTCAAGTATATAGATTCGAGCACTCTTGTTTCTGCATCCACTGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCTCGTCCCGGGTTATTGATTCTCCAGTTCAGTCCTTCACGGGCCACATGAATGTGAAGAACTTTGTGGGACTATCAGTGTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTCTTCATCTACCACAAAGCCTTTCCAATGCCAGCATTGTCATACAAGTTCGAAATCGATCCTCTTTCCGGTCATGAAATGGACGCCGCCGCTCAATTCATCTCGTCGGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTTGCTGCAAACTCAACTGGGCATATCAAAATTCTGGAAATGGTTTAG 2535 41.89 MCVYLFIWSFKWITMEASFDHLKNQDDLSGVCEEDILADPYVPSLKWSDISLRQWLDKPERSVDALECLHIFSQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNGQTVEVIKASSPFPSSLGSEGFRSIMTPINALSETSCMQSSSVYAAQISLNEGSGECRKMDGRHVEEAEDKMQSFPMKQILAMETTWYSSPEEASGGPSSSASDIYRLGVLLFELFCSFSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSNRPKLSDILQSEFLNEPRDDLEEREAAIELRKRIEEQELLLEFLLLMQQRKQEASHKLQDTISFLRSDIEQVMMHQTNFKRKSRSCPDLEKDNHLPLNLSSTTRVENTDSAGLGSRKRFRPGILIPDLEVCGDNLDDDQNEQGVLFKYSRLMKNFKKLELAYFLMRGRVNKPSRRQFVKHSSISSEGRGSIVLNERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLGFDRDGEFFATAGVNRKIKVFGYESIVNEDRDIHYPVVEMASKSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMEEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGMSIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHSKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCSSRVIDSPVQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFEIDPLSGHEMDAAAQFISSVCWRGQSSSLVAANSTGHIKILEMV 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9792886 9799147 + Carg14697-RA Car01g01033 141897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01033 844 ProSitePatterns Trp-Asp (WD) repeats signature. 727 741 IPR019775 -
Car01g01033 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 660 - -
Car01g01033 844 Pfam WD domain, G-beta repeat 620 656 IPR001680 GO:0005515
Car01g01033 844 Pfam WD domain, G-beta repeat 705 740 IPR001680 GO:0005515
Car01g01033 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 709 742 IPR001680 GO:0005515
Car01g01033 844 Coils Coil 305 325 - -
Car01g01033 844 ProSiteProfiles Protein kinase domain profile. 1 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01033 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 709 742 - -
Car01g01033 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 665 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01033 - - - mcha:111010399 1476.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01033 Car09g00778 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01033 Car-Chr1:9792886 Car02g01175 Car-Chr2:8009126 0 dispersed
Car09g00778 Car-Chr9:4583874 Car01g01033 Car-Chr1:9792886 0 transposed
Car18g00536 Car-Chr18:4320470 Car01g01033 Car-Chr1:9792886 1.62E-32 transposed
Car19g00306 Car-Chr19:4646395 Car01g01033 Car-Chr1:9792886 1.52E-49 transposed
Car01g01033 Car-Chr1:9792886 Car09g00777 Car-Chr9:4579651 3.50E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g219 . . . . . . . . . . Cma01g01208 . Car01g01033 Car09g00778 Sed04g2397 . . Bhi09g03427 Tan01g4395 Cmetu07g0812 . Hepe01g1386 . . . . . . . . . . . Cone14ag1062 Cone15ag1054 . . . . . . . . . . . . . Cmo01g01262 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01033 Car_Chr01 FPKM 2.142697 4.084126 4.806206 3.710046 7.940572 9.596717 4.955706 3.853096 3.223486 3.317898