Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01044 ATGGCTGCCGGAGACCGATCTACTTCAACCGCCGCCGTTGAGATCCGGTACAGAGGTGTTAGAAAGAGGCCATGGGGCCGTTACGCAGCGGAAATCCGCGACCCTCGCAAAAAAACTAGGGTTTGGCTTGGCACCTTCAACACGGCGGAGGAAGCTGCACGTGCTTACGACTCAGCGGCGCGTGAATTCCGAGGCGCTAATGCCAAAACCAACTTCCCAACTCCGAACGAATATCTCGTCGACGACAACAACAACAACAAGTTTCGTAGATCCGCTTGCAGTAGTCCCAGCGAGAGCAGCACCGTGGACTCCTCTTCCGCTCCATCCCCGACGGATGCTTCCCTCACTCGCTTCCTCGATGGCAGCCACCCTCCAGCCATTTCCCGTCCAATCTTCTTCTTTGACGCGTTCGCTCAGGCGGAGAAGATGAACGACTTTCGCCGGACTGTAACCGTCGCTGTTGCCGGCGGATCGGCGAGCGACTCCGATTCATCATCCGTAGTTGATTTCGACGATGATTCACAAAAATCACGGCCGTTTGATTTTGACCTGAATCTTCCGGCGGTGGAAGTTGCCTGA 579 55.79 MAAGDRSTSTAAVEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDSAAREFRGANAKTNFPTPNEYLVDDNNNNKFRRSACSSPSESSTVDSSSAPSPTDASLTRFLDGSHPPAISRPIFFFDAFAQAEKMNDFRRTVTVAVAGGSASDSDSSSVVDFDDDSQKSRPFDFDLNLPAVEVA 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9875064 9875642 - Carg14708-RA Car01g01044 141908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01044 192 PANTHER ERF FAMILY PROTEIN 7 114 - -
Car01g01044 192 PANTHER ERF FAMILY PROTEIN 125 180 - -
Car01g01044 192 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Car01g01044 192 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Car01g01044 192 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Car01g01044 192 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Car01g01044 192 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 114 - -
Car01g01044 192 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 125 180 - -
Car01g01044 192 MobiDBLite consensus disorder prediction 67 120 - -
Car01g01044 192 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Car01g01044 192 MobiDBLite consensus disorder prediction 157 179 - -
Car01g01044 192 MobiDBLite consensus disorder prediction 69 116 - -
Car01g01044 192 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Car01g01044 192 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Car01g01044 192 CDD AP2 16 73 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01044 Car09g00759 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01044 Car-Chr1:9875064 Car11g01596 Car-Chr11:12622845 6.89E-35 dispersed
Car01g01044 Car-Chr1:9875064 Car18g00365 Car-Chr18:2251102 9.93E-34 wgd
Car01g01044 Car-Chr1:9875064 Car09g00759 Car-Chr9:4487603 6.50E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2864 PF00847 AP2 1.70E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01044 K09286 - csv:101213540 220.705