Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g01054 | ATGGCACAATTGCCCCCAAAAATACCCTCTTTCCCTCAAAATTGGCCTCATTTTCCTCCTCCTTCAATGCATAATTTATCTCCGCCGCCTCCGCGGTCGTCCTCCGCCGCTTCCCACCATAACCCTTCATGGGTTGACGACTTTCTCGACTTCTCCACTGCCCGCCGTGGCCTTCACCGGAGATCCATAAGCGACTCCATTGCTTTTCTTGAAACCCCATTTTCCGATGAATGTCGTAACTCCTCCTCCTCCTCCTCCTCCTCCTCCGCTGTTGCTGTCGCCGTGCTGCATGCTACTCCGACGTTTGACCGGCTTGACGACGACCAGCTTATGTCGATGTTTTCCGATGACATTTCCGTGGCGGTGCCGGCGTCGTCGAACCCTTCATCCTCCTCCGACCAGAATAGTAATAACGATGAAAAGACAACGACAGTGCCATCCGAACCGCCGCCGCCGCCGCATCAGTTGAAGAATGAACCCGGTGAGGTCGAAAGCTCCTCTTGCCAATTACAGCAGCAAGCTGAACCTCCGCCGCCGTCTTCCGCCGCCGGTGATAACACCATTGATCCCAAACGAGTTAAGAGAATTTTAGCAAATCGACAATCAGCACAAAGGTCGAGAGTAAGGAAATTACAATACATTTCTGAGCTCGAGAGAAGTGTAACGACATTACAGACTGAAGTTTCAGCGTTGTCCCCAAGAGTGGCATTTTTGGATCATCAAAGATTGATTCTTAATGTCGATAACAGTGCTCTTAAACAGAGAATTGCAGCTTTGGCTCAAGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAGGAAGGAAATAGAGAGATTAAGGCAAGTTTATCATCAACAAAGTTTGAAGAAAATGGGAAGCAATCAAAATCGGAATGGGGCGGCGCCGCCGTCTTCAGGGAAAGAAGCTCCGCCGCGAATGGCTGAGACGGAGACGGAGCTGGCTGTAAGTTGA | 975 | 49.74 | MAQLPPKIPSFPQNWPHFPPPSMHNLSPPPPRSSSAASHHNPSWVDDFLDFSTARRGLHRRSISDSIAFLETPFSDECRNSSSSSSSSSAVAVAVLHATPTFDRLDDDQLMSMFSDDISVAVPASSNPSSSSDQNSNNDEKTTTVPSEPPPPPHQLKNEPGEVESSSCQLQQQAEPPPPSSAAGDNTIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALRKEIERLRQVYHQQSLKKMGSNQNRNGAAPPSSGKEAPPRMAETETELAVS | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9925086 | 9926509 | + | Carg14718-RA | Car01g01054 | 141918 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g01054 | 324 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Car01g01054 | 324 | Coils | Coil | 270 | 290 | - | - | |
| Car01g01054 | 324 | MobiDBLite | consensus disorder prediction | 284 | 324 | - | - | |
| Car01g01054 | 324 | MobiDBLite | consensus disorder prediction | 75 | 91 | - | - | |
| Car01g01054 | 324 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 189 | 241 | IPR004827 | GO:0003700|GO:0006355 | |
| Car01g01054 | 324 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 194 | 209 | IPR004827 | GO:0003700|GO:0006355 | |
| Car01g01054 | 324 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Car01g01054 | 324 | MobiDBLite | consensus disorder prediction | 121 | 190 | - | - | |
| Car01g01054 | 324 | MobiDBLite | consensus disorder prediction | 121 | 144 | - | - | |
| Car01g01054 | 324 | MobiDBLite | consensus disorder prediction | 287 | 303 | - | - | |
| Car01g01054 | 324 | MobiDBLite | consensus disorder prediction | 160 | 180 | - | - | |
| Car01g01054 | 324 | Pfam | bZIP transcription factor | 191 | 236 | IPR004827 | GO:0003700|GO:0006355 | |
| Car01g01054 | 324 | MobiDBLite | consensus disorder prediction | 65 | 91 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g01054 | Car09g00746 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00173 | Car-Chr1:946336 | Car01g01054 | Car-Chr1:9925086 | 9.45E-100 | dispersed | |
| Car01g01054 | Car-Chr1:9925086 | Car11g01492 | Car-Chr11:12037042 | 6.47E-100 | dispersed | |
| Car14g01342 | Car-Chr14:11335555 | Car01g01054 | Car-Chr1:9925086 | 9.57E-21 | dispersed | |
| Car01g01054 | Car-Chr1:9925086 | Car09g00746 | Car-Chr9:4438312 | 6.71E-160 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 2866 | PF00170 | bZIP_1 | 9.50E-10 | CL0018 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g01054 | - | - | csv:101210452 | 385.956 |