Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01063 ATGGATTTCCAGGATGATGGCTTTGAGGGTTCTGCGAATGAAGACACTATTTTTAAGGAGGTTTTCTTTGGGAATAGTTCTAGCCACTCCAATAGATGTCCTTGCAAAGCATTTAGTAATAAACATGAGCCGTGGAAGATAAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCGACAGTGTCCAGTCATTCTTATTCAAGAAATATAAAGGTTGATGAATGCTACAATGCTACTGAGAATATTAGGACCGATTCTGCACCGTATAGTTTTCCATGCAAATGCACTTCAGTGGAAGACAATTATGAGAATGAAAGTGCTAAGCGAATAAAACTTTCAACTGATGAACCTTCTGATTCTATACCTGATCTAGGTAAGGTTATGAACTCATCAGTAATTATAAGAGAATCTGCTTCTACATTCCACGTTGTAGAATCGTCTAGACAGGGTATTGTATCAAGTTGCTACCTGTTAAAGGATTTTGAAGAAAGGGACAGCGATCTGGGCGAACCTGATGTACCCAAATGCACGTTGTTGATTTTAGAAGGTCATGAACCCAATATGGTGAATAAAGTTAGTGCTTCGCCTGTTTCCGAAGAGAGCTCAATGACCAGACTCTTGGTAGCAAGTCCTTCCGATACATTCAACGAGAAGTTTGGATCTCCATTACATTTGGAGGTAGGAGAAGCGAAATTTCAATGTCCAGAACTGGACACTTCCTTGAAGACAGATTTGATAAGGGATCCCCGTCCTCTTCTCCACTATCACGTTGTTCACTTACTTATTGCAGCTGGATGGTCTATTGAAAGGCGCAAAAGACCTTGCAGGCGCTATTTGGAAACCGTTTATAGATCACCCCAGCGAAGGCTCTTTCGTGAGTTTCCCAAAGCTTGGAGGGTTTGTGGTGAACTCCTATTTGCTGATAGATGTCGTTTTGTAAAAGAATCTGACATCAAGGAATGGACCGGCATTCATCAATTCTTATTTGATCTTTGTGACACACTGTTACAGGTTGGGAAGGAAATGAATCAACTAGGAGCTTCAACGTCACTCGCTCATTGTTGGGTTATTCTAGATCCCTATGTTCAGGTTGTTTCGATTGACAGAAAGATTGGTACACTTAGGAAGGGAGAATTAGTTAGAGTTACCCGTAATATTAGGGTTATTGGGAACAATAAGACTGATACTTTTGTGACATTAACAAATGAGGATAGTATTTGTAACCTATCTGCTGACAAAAATGCACCTCCACTCCACGATCATTCACCGTCTGCCAAGAGTGCATTAACGGAGGCTGCATTGAAAGATCTCGATGGTGGCAATTGTGCTTCTGATGAGCAAACCTGTGATACAAGTTTATCTAATTACTATGGACATACAAAAGATGGAACAATGAAATTTCCGACAAGGGTGTCTAATTATGTCTCCGATGTAGGGGATGGTATGAATTGCTTGGTCAGTCATTGTAGTGCACTCAAACCTAGATGTCCGCCTCGTGGTCCTGTTCTGTCTGGAAATTCAGATTATGTTATCCCAGTTTCTGGCCCTACATCTCCTTATGAGGACAGCGCTTTGTATAGCTCGGATGAACAGAGCTCTGAAAATCAAGTTGAAAAGCCTAATGAAATGGTGAAAAATGCACTGATGCATTCCCTGGGAGAAGGAAAAAAAGTGGAAGTCCCACTCAATGCTAAGATGCAAAATAATCTGGAAGAATCTCTTAATTACTGTCCAAACTATATAAGCGATGATTTATCTCATTCTTGTGCTTCACGGGTCGTACAGAAGTTTACACATAATGAAGGTGGGCAGCACGTTTCATCTTCAAAGTTCAAAACAGAGAGTAAAGTTTCTGCTGTACATTCTAATTTGCAGAAGAAAGGGCGTAGAAAGTGTAAAAAGATATCTGAAATTAATCCTACCTTGCCACCTCAGACCGATATTGACGTGAGTTGTTCTCAATTCGATATGATAGAATACCAGAAGTCCCATATAGCTGATACGAAAAACATGGACGGTGGTCTGAAGTCCTTGTATCTCAGTCCTATTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAAAAAGATTTATGACAGTCTTAGAGGTTCAAAAACGAGAAAGAAGAAATTGAACGAATGTCAAATTGAAGATGACGACCTATTAGTTTCAGCCATAATTAGAAACAAAGATGTCCGTTCGAGTGCTGCTGGATTTTCCCCTGTAAGAAAGTTCTTAAAGCCGAGAGCAAAAACGAACCGCAAAAGGCAAAAGAGTAGTTGTAAGCTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGGAAGTGGTATACCATTGGGGCTAGAACAATCTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGGCATGATCCAATATCGAAACTCTCGGGATAATAGTGTAGTTAAATATGAATTACTGGAGATGGCATCATCTGCAAGTTGCTGCAGTGAGCTACTCTCAATAACTGAATTTAAAAGGCACTCGGGTTCCAAATTTAATCGTCCTTGTTTGAATCTTTACTTGGACTCTGGGAAGCCTTTCATGTTATGTCAGCTTCAAGCCTGGTCAACTGAGTATAAGACAAGGAGAAGTAGGACCAGAACAGTTCAAGTCGATGAAGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGGGGAGAGCTAATATGCTGTGATAATTGCCCCTCTACATTCCATCATTCTTGTTTGTCAATTCTGGAGCTCCCTGAAGGCAACTGGTATTGCTCGAACTGTACTTGCCGAATATGTGGTGATCTGGTGAATTATAAAGAGTCGTCGAGTTCTTCTGATGCACTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCAATGCCTGAAAGAAAAAGACGTTGATTATGGAGCAGAGTCTCTTATTTGGTTTTGCAGTGAGAGTTGCCATAAGATTTACACAGGTCTTCAGTCTCAACTTGGGTCGATCAATCAGTTTGCTGATGGATTTTCTTGGATGCTTCTTCGATGTATTCATAGTGACCAGAAAATTCTATCAACCCCACGCTTAGCTACGATGGCAGAATGCAATTCCAGATTAGTAGTGGCTCTTACTATAATGGAGGAATGCTTTTTGTCCATGATGCTATTGTCCTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACCGAAGGGTTTGGGTTCATACCCGTGGAAGATGTTGAGAAACAAAGTCTTCACCGGTTCAATCTGATGGTGTTTCCTGGGACAGTGCTACTCAAAAAAGCCTTGTATGTAAGAACTCGTTCGGATGCTGATTCAAAACAACAATGTGTTTACTCCTGTCCTGATGAAGCACGTCCTAGAATGGAAACGATACGTTTAAAAGATCAAGACTTGCATGAACACGATGAAAAGACGAAGAACGATCACAAGGGAAATCCAGCTCCAATTGATTCATCCACATTGCATTTGGTTGAATCTAATAGAATGGATACTTCCATTCAGTCAGCACTACAATCTGATGGAAACTGTTGCACTGACGAAGTTCGAGCCACGACCCATGAGTCGCATGAGTCGTTAGAACAGAACGTTGAGCTTCCAGAAGGAAAGAGCTGGGATAACGAAGTTCACGTAGCCACTATGACGAGATTAGTCGAACCTTTTGTACTAACTTAG 3717 40.87 MDFQDDGFEGSANEDTIFKEVFFGNSSSHSNRCPCKAFSNKHEPWKINDASLCSSSELSTVSSHSYSRNIKVDECYNATENIRTDSAPYSFPCKCTSVEDNYENESAKRIKLSTDEPSDSIPDLGKVMNSSVIIRESASTFHVVESSRQGIVSSCYLLKDFEERDSDLGEPDVPKCTLLILEGHEPNMVNKVSASPVSEESSMTRLLVASPSDTFNEKFGSPLHLEVGEAKFQCPELDTSLKTDLIRDPRPLLHYHVVHLLIAAGWSIERRKRPCRRYLETVYRSPQRRLFREFPKAWRVCGELLFADRCRFVKESDIKEWTGIHQFLFDLCDTLLQVGKEMNQLGASTSLAHCWVILDPYVQVVSIDRKIGTLRKGELVRVTRNIRVIGNNKTDTFVTLTNEDSICNLSADKNAPPLHDHSPSAKSALTEAALKDLDGGNCASDEQTCDTSLSNYYGHTKDGTMKFPTRVSNYVSDVGDGMNCLVSHCSALKPRCPPRGPVLSGNSDYVIPVSGPTSPYEDSALYSSDEQSSENQVEKPNEMVKNALMHSLGEGKKVEVPLNAKMQNNLEESLNYCPNYISDDLSHSCASRVVQKFTHNEGGQHVSSSKFKTESKVSAVHSNLQKKGRRKCKKISEINPTLPPQTDIDVSCSQFDMIEYQKSHIADTKNMDGGLKSLYLSPISCHSERKGSKFKKIYDSLRGSKTRKKKLNECQIEDDDLLVSAIIRNKDVRSSAAGFSPVRKFLKPRAKTNRKRQKSSCKLLLRSLGNGEKNYKDGKWYTIGARTILSWLLDAGVISSNGMIQYRNSRDNSVVKYELLEMASSASCCSELLSITEFKRHSGSKFNRPCLNLYLDSGKPFMLCQLQAWSTEYKTRRSRTRTVQVDEDRNDDSCGICGDGGELICCDNCPSTFHHSCLSILELPEGNWYCSNCTCRICGDLVNYKESSSSSDALKCSQCEQKYHGQCLKEKDVDYGAESLIWFCSESCHKIYTGLQSQLGSINQFADGFSWMLLRCIHSDQKILSTPRLATMAECNSRLVVALTIMEECFLSMMLLSFKVKKLVIAAIPSLVETWTEGFGFIPVEDVEKQSLHRFNLMVFPGTVLLKKALYVRTRSDADSKQQCVYSCPDEARPRMETIRLKDQDLHEHDEKTKNDHKGNPAPIDSSTLHLVESNRMDTSIQSALQSDGNCCTDEVRATTHESHESLEQNVELPEGKSWDNEVHVATMTRLVEPFVLT 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9977819 9985391 + Carg14727-RA Car01g01063 141927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01063 1238 CDD PHD1_AIRE 894 933 - -
Car01g01063 1238 PANTHER INCREASED DNA METHYLATION 1 1054 1208 IPR031086 -
Car01g01063 1238 PANTHER INCREASED DNA METHYLATION 1 2 1053 IPR031086 -
Car01g01063 1238 MobiDBLite consensus disorder prediction 1144 1159 - -
Car01g01063 1238 MobiDBLite consensus disorder prediction 1144 1166 - -
Car01g01063 1238 Pfam Tify domain binding domain 827 867 IPR032308 -
Car01g01063 1238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 936 992 IPR013083 -
Car01g01063 1238 ProSiteProfiles Zinc finger PHD-type profile. 891 936 IPR019787 -
Car01g01063 1238 PANTHER PHD FINGER FAMILY PROTEIN 1054 1208 - -
Car01g01063 1238 PANTHER PHD FINGER FAMILY PROTEIN 2 1053 - -
Car01g01063 1238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 883 935 IPR013083 -
Car01g01063 1238 SUPERFAMILY FYVE/PHD zinc finger 875 934 IPR011011 -
Car01g01063 1238 SMART PHD_3 935 988 IPR001965 -
Car01g01063 1238 SMART PHD_3 893 934 IPR001965 -
Car01g01063 1238 Pfam PHD-finger 894 935 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01063 - - - bhj:120086236 1617.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01063 Car09g00728 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01063 Car-Chr1:9977819 Car08g01026 Car-Chr8:6999023 2.60E-10 dispersed
Car02g01142 Car-Chr2:7831290 Car01g01063 Car-Chr1:9977819 2.78E-10 dispersed
Car01g01063 Car-Chr1:9977819 Car09g00728 Car-Chr9:4321540 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2868 PF00628 PHD 1.60E-07 CL0390 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01063 Car_Chr01 FPKM 9.120317 9.938614 24.735687 25.199715 4.677922 4.203598 5.680061 30.440968 28.184738 35.900002