Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01065 ATGTCGCATTCTCTCAATCCCATTTCGGACTACGACCATCTCTCCGATCGCTTTCGTGATTCCCTCAGTTGTGAACCCAACAAGCCTGATTTTCGCGACCTAGATCTGGGTTCCCCTGTTTCGCCATTACGGACTCGGAACCAGACTGGTGGCGGCCCTGCTGCGAGTAGTAGTTCCAGCTCGTCCGGGTCGGTTTCTGGCCGGAATGCAACGAACCCAGTTGCCAAAAGATCTGATTCGGGTCCTAATAATCATTCCGGTGAACTCTCTGGGTCTAGCGAGAGCAGCCCAACTGCGGCGGAGAGCCTCCGATCCATTGGGACTCCTAGGAATTTCAAGTCTGGTCATACTAGATCCGATTCTGGATCGAGTCATCCGTTAATCTATTCGGGTCAGTCTCAAACCTCTGTTACTTCCCCGTCGAATGTGCTTCCCACCGGTAATATTTGCCCTTCTGGAAGGGTTTTGAAAACGAGCATGCCGTCGACCAACCGGAGTTCGAGATCCGATGTTTTGGGTTCTGGGTCGGGAAATTACGGCCATGGGAGTATAATGCGGGGCCTCGGCGGTGTTAAAACCGGCGGCGTTGAATCGGTTAGTAATGTTAGCTCGAGGGCTGGTTGTGGTGGTGGTAGTGGTGGTGGTGACTCGCTGAAGAGGGCGAAACAGAGTGGGGATCCAGAGGAGTTGAAGAGAGCTGGAAATGAACAATACAAAAAGGGGCATTTTGCTGAAGCTTTGAGTCTCTATGATCGAGCTATTGCGGTTTCCCCTGCCAATGCAGCTTACCGAAGCAACCGTGCTGCTGCCTTGACCGGCCTCGGGCGGCTTGGCGAGGCGGTAAGCGAGTGCGAGGAGGCGGTAAGATTGGATCCCAATTATGTGAGGGCTCATCAGCGTTTGGCATCCTTGTTTCGTAGGTTAGGACATGTAGAGAATGCCAGGAAACATCTTTGTTTTCCCGGCGTTCAGCCCGATCCGAGCGAGCTGCTGAGACTGCAGGCAGTCGAAAGGCATATAAGCAAATGCAGGGATGCCCGTCGACTCAAAGATTGGCGAAGCGTATTGAAGGAGGCCGATGCTGCGATTGCCAGTGGAGCTGATTCTTCGCCTCAGCTGTTTATGAGTAAAGTGGAAGCTCTTTTAAAGCTTCATCAGATTGAAGATGCTGAATCCAGCTTATTAAGCATTCCGAAGTTACATCCATCGATTAATACGTGCTTACAAATGAAGTTTTTCGGGATGATTTCGGAAGCTTACTCTCATTTCATTCATGCCCAAATCGAGATGGCGTTAGGAAGGTATCTTCGAAAGTCCGATTTCGAAACGGTTTTGAGAGCGTGGGAATTGGATAATGGATATGTTGCAGTTACGGCTGCTGAGAAAGCTGCACAGATTGATCCTCGAAATGTAGAAGTGGCAATGCTGCTTAGTAACGTGCGGTTGGTTGCACGAGCTCGTACTCGAGGCAACGATCTCTTTAAATCAGAAAGGTATACAGAAGCTTGCTCAGCATATGGGGAAGGACTTAAGCTTGATCATTCGAACTCGGTCCTCTACTGCAATCGAGCAGCCTGTTGGTTTAAACTCGGGATGTGGGAGCGGTCTATCGAAGACTGTAATCAAGCGTTACTTATCCAACCGACTTACACGAAGGCCCTCCTTCGAAGGGCTGCCTCAAATAGTAAGCTCGAAAGATGGGAGGATGCTATACGAGATTACGAAGCTTTAAGGAGGGAACTTCCAGATGACAATGAAGTTGCTGAATCTCTTTTTCATGCTCAAGTCGCGTTAAAGAAATCACGTGGTGAAGAAGTTCATAATCTGAAGTTCGGTGGCGAAGTCGAGGTGGTTTCCAGCATAGATCAGTTCCGAGCTGCGATATCGTTCCCAGGCGTGACTGTTGTTCATTTCAAAGTAGATTCCGATATACAATGCAAGCAGATATCGCCATTCGTCGACATCCTTTGTCGTCGCTATCCTTCCATTAATTTCCTCAAGGTGAATCTGGAAGATAGTCCAGCAATTGCAGATACCGAAAACGTAAGGATCGTACCGACGTTCAAGATTTACAAAAGTGGAAACCGAGTAAAAGAGATCATATCTCCGACTCACGACATGTTAGAGTACTCAGTGAGGTATTATAGCTTCTTATAG 2157 48.73 MSHSLNPISDYDHLSDRFRDSLSCEPNKPDFRDLDLGSPVSPLRTRNQTGGGPAASSSSSSSGSVSGRNATNPVAKRSDSGPNNHSGELSGSSESSPTAAESLRSIGTPRNFKSGHTRSDSGSSHPLIYSGQSQTSVTSPSNVLPTGNICPSGRVLKTSMPSTNRSSRSDVLGSGSGNYGHGSIMRGLGGVKTGGVESVSNVSSRAGCGGGSGGGDSLKRAKQSGDPEELKRAGNEQYKKGHFAEALSLYDRAIAVSPANAAYRSNRAAALTGLGRLGEAVSECEEAVRLDPNYVRAHQRLASLFRRLGHVENARKHLCFPGVQPDPSELLRLQAVERHISKCRDARRLKDWRSVLKEADAAIASGADSSPQLFMSKVEALLKLHQIEDAESSLLSIPKLHPSINTCLQMKFFGMISEAYSHFIHAQIEMALGRYLRKSDFETVLRAWELDNGYVAVTAAEKAAQIDPRNVEVAMLLSNVRLVARARTRGNDLFKSERYTEACSAYGEGLKLDHSNSVLYCNRAACWFKLGMWERSIEDCNQALLIQPTYTKALLRRAASNSKLERWEDAIRDYEALRRELPDDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEVVSSIDQFRAAISFPGVTVVHFKVDSDIQCKQISPFVDILCRRYPSINFLKVNLEDSPAIADTENVRIVPTFKIYKSGNRVKEIISPTHDMLEYSVRYYSFL 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10000889 10004566 + Carg14729-RA Car01g01065 141929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01065 718 MobiDBLite consensus disorder prediction 1 179 - -
Car01g01065 718 Pfam Thioredoxin 622 704 IPR013766 -
Car01g01065 718 MobiDBLite consensus disorder prediction 41 176 - -
Car01g01065 718 MobiDBLite consensus disorder prediction 221 237 - -
Car01g01065 718 MobiDBLite consensus disorder prediction 202 237 - -
Car01g01065 718 MobiDBLite consensus disorder prediction 10 32 - -
Car01g01065 718 Pfam Tetratricopeptide repeat 233 293 - -
Car01g01065 718 Coils Coil 557 577 - -
Car01g01065 718 Pfam Tetratricopeptide repeat 519 550 IPR001440 GO:0005515
Car01g01065 718 ProSiteProfiles TPR repeat profile. 227 260 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01065 - - - csv:101208569 1199.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01065 Car09g00731 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01065 Car-Chr1:10000889 Car19g00809 Car-Chr19:8716796 0 dispersed
Car20g00077 Car-Chr20:402868 Car01g01065 Car-Chr1:10000889 3.25E-16 dispersed
Car01g01065 Car-Chr1:10000889 Car09g00731 Car-Chr9:4347686 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01065 Car_Chr01 FPKM 24.317299 27.12706 31.329916 33.395805 35.371731 28.918016 35.763828 33.054161 32.874981 33.260654