Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01086 ATGCCTGGGAATAAGTATAAAGTTAACTCAAACGATATTACGGACCATATACCAGGTCGACTAGAAAGGCTCTTGCGAGAGAGAAAGCTAAGGAAAAGCAGTAAGGATTCATATTCAAATGAGGTGAACGACCACAGTAAGGAGTCTGAACTAATTGAAAATGACCTTCGTTCGAAAGAAGAAGAAAACGCTGGAATTTCCTATAAATTTTCGGAAGCTTCTGCAGCCTCAAGGGCCTTTGCCGAAGGATGTGACAAGCAAGAGGGCAAGCCTCCCAGACAACGGTTGCTGGTTGTGGCCAATAGGCTGCCAGTTTCTGCGGTTAGGAGAGGTGAAGATTCCTGGTCTCTAGAGATTAGTGCTGGAGGTCTAGTGAGTGCACTTCTGGGCGTGAATGACTTTGAAGCGAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATGAGGTAGGACAAAAGGCACTGACTGAAGCTTTGGCTGAGAAGAGGTGTATCCCTGTTTTCCTTGATGAAGAAATTGTTCATCAATACTACAATGGTTATTGCAACAACATTTTATGGCCTTTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCCGCATACAAGAAAGCAAACCAAATGTTCGCTGACGTAGTAAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCCAAATGTCTAAAAGATCATAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCTTCTGAAATCCACAGGACCCTTCCGTCCCGATCAGAGCTTCTGCGTTCAGTACTTGCTGCCGATCTGGTTGGCTTTCACACGTATGATTATGCTCGTCATTTCGTAAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGATCAAGGAAAGCTAACGCGAGTTGCTGCATTCCCTATTGGTATCGACTCAGATCGATTCATACGTGCACTCAAGACTGCTGAAGTCCAAGTACGCATTGAAGAGTTGAAGGATAGATTTAAAGGTCGAAAGGTAATGTTAGGCGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAATTCTTGGAGGAAAACACTGATTGGCGTGATAAAGTTGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATATCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACATTGACTACCGTGCCCATACATCATCTGGATCGCTCCCTTGATTTTCCTGCATTATGTGCGCTCTATGCTGTAACTGATGTAGCGCTTGTCACATCTTTGAGGGATGGAATGAATCTCGTCAGTTATGAATTCGTTGCTTGCCAGGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGTTTGCTGGTGCTGCGCAATCTCTGGGTGCTGGGGCACTTTTGGTCAACCCTTGGAACATAACAGAAGTCGCAAAATCCATCGAGCGAGCATTAAAGATGGGTGCTGAAGAAAGAGAAAAGCGCCATTGGCATAATTTTCTTCATGTGACAACACACACTGCCCAGGAATGGGCTGAAACTTTTGTGAGTGAACTTAACGATACAGTAGTTGAAGCTGAACTGAGGATTAGACAATGTCCACCCCCGCTTCCATTTGACAATGCAATGAAACGTTATGAGCAATCTACTAATCGATTACTCATACTGGGGTTCAATTCAACATTAACTGAACCAGTGGACACTCCTGAAAGAAGAGGCGATCAGATTAGAGAAATGGATCTGAAACTACACCCGGATTTGAAAGAACCATTGACGGCGATTTGCAACGACCCCAATACGACAGTGGTCATTCTCAGTGGGAGCGATAGAACAGTGTTGGATGATAACTTTGGGGAGTATGATATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTCACAAGAGGTGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCACGTTTTTGAGTACTTCACAGAAAGAACTCCCCGTTCCCATTTTGAACTCCGCGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGGGATATGCTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCCGTTGAAGTGCGAGCTGTTGGCGTTACCAAGGGATCAGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTTTACACATTCTTTGAGCCTGAACTACCATCGGATACCATAGGCATGGCAAGATCAAAGGGAACTGACGGACTTAAGTTAACGGGGGAGAGAAGATCTTCCATCAAAGTTCCTGCAAGTAGGAACGGATCGACATCGCCTCACAATAAGGCGCGGTCGAACCTGGAGAAGAAAACTTCAAATCATAATTGTGCAAACGGTCGTAAACCATCACCGGAGAAGATTCAATGGAATGTGCTCGATCTCCAGGCTGAGAACTACTTCTCTTGTGCCGTCGGACGATCTCGGACAAATGCTCGATATATGCTCGGATCATCAGATGATGTGGTGGCATTCCTAAAGGAGTTGGCAAGTGCAAAGTCATTTTCTTGA 2787 44.13 MPGNKYKVNSNDITDHIPGRLERLLRERKLRKSSKDSYSNEVNDHSKESELIENDLRSKEEENAGISYKFSEASAASRAFAEGCDKQEGKPPRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVNDFEARWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKDHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKTAEVQVRIEELKDRFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENTDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIERALKMGAEEREKRHWHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQCPPPLPFDNAMKRYEQSTNRLLILGFNSTLTEPVDTPERRGDQIREMDLKLHPDLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARSKGTDGLKLTGERRSSIKVPASRNGSTSPHNKARSNLEKKTSNHNCANGRKPSPEKIQWNVLDLQAENYFSCAVGRSRTNARYMLGSSDDVVAFLKELASAKSFS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10183913 10194895 + Carg14751-RA Car01g01086 141950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01086 928 CDD HAD_TPP 593 813 - -
Car01g01086 928 Gene3D Glycogen Phosphorylase B; 87 342 - -
Car01g01086 928 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824|GO:0005992
Car01g01086 928 MobiDBLite consensus disorder prediction 31 51 - -
Car01g01086 928 CDD GT20_TPS 95 560 IPR001830 GO:0003824|GO:0005992
Car01g01086 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 922 - -
Car01g01086 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 922 IPR001830 GO:0003824|GO:0005992
Car01g01086 928 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 563 - -
Car01g01086 928 Pfam Trehalose-phosphatase 618 827 IPR003337 GO:0003824|GO:0005992
Car01g01086 928 Gene3D Glycogen Phosphorylase B; 343 543 - -
Car01g01086 928 MobiDBLite consensus disorder prediction 840 855 - -
Car01g01086 928 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825|GO:0005992
Car01g01086 928 SUPERFAMILY HAD-like 592 922 IPR036412 -
Car01g01086 928 Coils Coil 42 62 - -
Car01g01086 928 MobiDBLite consensus disorder prediction 820 875 - -
Car01g01086 928 Gene3D - 733 927 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01086 Car-Chr1:10183913 Car16g01107 Car-Chr16:9519005 6.87E-130 dispersed
Car01g01086 Car-Chr1:10183913 Car18g00415 Car-Chr18:2600958 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01086 K16055 - csv:101204478 1745.33