Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01090 ATGGATTCCCTCCATGCCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACTAGAACGAAAGCAGCAAGAACAGGATCAATCTCTCCATTCTTGTTCCCTCCCTGCGAAGAAGCGAAAGGAGTCTCGTGATTCATCAATCTTTATCCCCGATGCTACATTACCCAACCCAATCGCCATTTCCGCTTCTACTTACTGCTTGCCGACGAAGAAAAGAGTCTGGGCGTTTCATCCTGATTTCGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCTCCTCCGGAAGAAATATCGATTTCAGAAGCAGAATCAGAGAGAGAGGAAAAACAGAAAAAGGAAAGCTCTGATGTTGAGATTGAGCATCAACAGATTGAAGCTATCCAAGAAGAAGAATATGAGGATGAAGAGGACGGAATCCTCTGTGCGATTTGTCAAAGCACGGATGGAGACCCATCCGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACATGCTTCGTGCTACGGCAATCCTCTGGTGAAGAATGTACCAGAAGGTGATTGGTTCTGTACCCAATGCTTAGCTTCTTCGTCTTCCGAGATGGAGAAGAAAGCTTCTGAAACACCATTTTCATGCTGTCTTTGTCCTATCAAAGGAGGGGCAATGAAGCCAACAAACGATGGCCGATGGGCTCATATTGTTTGTGGCCTCTTTGTTCCTGAAGTGTTCTTCGAAGACCCAGATGGCAGAGACGGGATTGATTGCTCAAAGATTCTCAAAAGGAGATGGAAATCTAAATGCTATATCTGCAAAACCTCTGAAGGTTGTGCCATTGATTGTTCGGAGGCTAAATGCAGTTTAGGTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTTTGCATTGAGTACCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAAAAGCCACACTGATTTGTGGAAGAAGCAACAACTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAAGTAAGTAA 1020 44.71 MDSLHALPPLKRLRILQELERKQQEQDQSLHSCSLPAKKRKESRDSSIFIPDATLPNPIAISASTYCLPTKKRVWAFHPDFAPESLDLNVEYKPPPEEISISEAESEREEKQKKESSDVEIEHQQIEAIQEEEYEDEEDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKNVPEGDWFCTQCLASSSSEMEKKASETPFSCCLCPIKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGRDGIDCSKILKRRWKSKCYICKTSEGCAIDCSEAKCSLGFHVTCGLKEDLCIEYQEGRRSGAIVAGFCKSHTDLWKKQQLTGKFKIVARDESK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10216488 10217614 + Carg14755-RA Car01g01090 141954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01090 339 MobiDBLite consensus disorder prediction 100 122 - -
Car01g01090 339 Pfam PHD-finger 143 191 IPR019787 -
Car01g01090 339 ProSiteProfiles Zinc finger PHD-type profile. 140 193 IPR019787 -
Car01g01090 339 Pfam PHD-zinc-finger like domain 208 305 - -
Car01g01090 339 MobiDBLite consensus disorder prediction 21 51 - -
Car01g01090 339 ProSiteProfiles Extended PHD (ePHD) domain profile. 206 318 IPR034732 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01090 Car-Chr1:10216488 Car08g00078 Car-Chr8:464415 1.69E-29 dispersed
Car01g01090 Car-Chr1:10216488 Car09g00601 Car-Chr9:3418600 3.84E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2869 PF13832 zf-HC5HC2H_2 9.30E-29 CL0390 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01090 K11380 - csv:101203744 535.028