Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01092 ATGGACTGCGAAGTGAATGAAAGCGAGGAATACTCGCTGCTCAAGAATCTGAGGCTCGAAATCGATGGAGATGATGGGTGTTTTAATATCTGTTTTTGGGTTTATCTTATGAATTCTTCCACATTCCCCGTTTCAATCCTTCAGGTACAGTTAGATTCATCAGGCATGAGTTCTTTTCTGGTTCTAAGTGAAAGGAATAGAATTAAGATTATGCCTTTGCCCGCCTTACACAAACCCGATGAACGTTCCAGCGCTGGTAGTTCTTCTTCCGGGAATGAAGTTCCACATGAATGTCTAGACATCGATTTTCCCATGGAAAAATGGGTTCATATTGGATGTGAGGTCTCCACCGATTTTGTCCGACTGCATATTAATGGGAAAATGGTTGGAGAAAAGCCTATGTCATCTTCACTCGGTGAAGATGCCATTCCAAGGGGTTCGGGTAGGATTGTTTTGGTCAACAATGGTGAAGACAACAGCCTGCAAGGCTATGTTCATAATGCAAAAGTTTTGCATTCGGTATCATCGATCAAGGATTCTTATGTCGAGGACCTACCCGTTAAATTATTTATCGACAACTCTTCGACCACGGAGATTGAAGAGGGCAGTGATGGCATATGGAATATAGTTGGTGGCAAGCCATCTTGTCGTCGAAATTTCTCATTGGAAGTTATGCTGTTAGATTCCTCTGGCCAGCCTGTTCTTAAGGAACTCGAGGTTGTTGCCTCCCTCATCTATGCTGAAAGTGGGGAAGCTGTGGAGAAGTCAAGTGATGAAGAAGCTCCCCTTTTGGCAAGCTATGATGGTGTTGAATTTGCTTCCAGTGATAGACCAAGTAAACTGTTGAATGGGCGTGCATCCTTTAAGCTAAAAATATCTCAGCTATCTTCTAAATGTGATAACAAGCTCTTCCGCATAAGATTTTGCATACCTAAATTTGAGGGGTATCCCTTCTTCGAGGCTCTCTCTTCTCCAATTCGCTGCATCTCAAGGAGTCGAACTACTCGTACGTCAACTTTGATGTGGAAAAGATCTGCTGTCCACGGACTCGATGGATCTCGGCCATCTGGTTTGGACAACGGAACCTCAGAACACGAGCATGTTTCAATAGATGAAGAAAAACCAAGTCCACTATTGAAGAGGATTAAAGTGGGACAAGATAGAGTTTTACCGAACTCTAACGACGATCGTCCTTTACGGCAACCCGATGAGGAATGCAACTCTCATTCTTTTACTGCCAATGAGGCTGAAAATGGATTTGGCACAAATTTAAGAGAGAGACCCAAAAATAATGGATCAAGAAGAGCATCCCCATCAGACTCTGCAAGCACTCAAGCCAGACATTTGGCTCCGAATAGAACTACAACCAGTGGAAACCCGATATCGGATGTGAACATTTTCAAATATTGCCTAGCAGGTTTACCTGAGAGGTCACATCTGCTCAAGGAGATTGCAACATCCGTGTCGCAGGAAGAAGTTTCGGAATTTGCCGACCATGTTTCCCTATATTCTGGATGTTTACACCACAGGCATCAAATCCTAATGTCAAGAAAATTAATAGAAGAGGGAATTCAGGCCTGGAATTCAATATCTCAAAACAAGCATCATGTTCAGTGGGAGAGTGTTGCTTTTGAGATTGAAGAACAGTTCATGAGAATTTCTGGCTGTAGCTCTAGATCTCTCACTCAGCAGGACGTCGAGTTGCTGCGGAGAATTTCTGGTTGTCACGAGTATCTGGCTCGAGAGAACTTCGAGAGAATGTGGTGTTGGTTATATCCTGTAGCTTTTACTTTATCCAAACAATGGATCAATGCAATGTGGAGTTCTTTATCGCCCAAATGGATCGAAGGATTCATTACGAAAGAAGAAGCCGAATTATCGCTTCAAAGTCCGACGGGTCTTCAAGAGCCTGGGACGTTTATTCTTCGGTTTCCCACTTCGAGAAGCTGGCCTCATCCTGATGCTGGTAGCTTGGTAGTCACCTATGTTGGCAATGACTATGCTCTCCATCATAGACTTCTTACACTTGATCACTTTTTCAGTTCTGCTGAAGGAAAGAAGAATATGAGAAGCCTTCAGGACATGCTTCTTGCAGAGCCCGAGCTCTCTCGATTGGGAAGACATCTCCCAGTTAAGTTGCGTACATATTGCACATACCGGAGTCGTTTTGGAACGAATATTACAGGCATGTCGGAGCCACTCGAGAACTAA 2211 43.69 MDCEVNESEEYSLLKNLRLEIDGDDGCFNICFWVYLMNSSTFPVSILQVQLDSSGMSSFLVLSERNRIKIMPLPALHKPDERSSAGSSSSGNEVPHECLDIDFPMEKWVHIGCEVSTDFVRLHINGKMVGEKPMSSSLGEDAIPRGSGRIVLVNNGEDNSLQGYVHNAKVLHSVSSIKDSYVEDLPVKLFIDNSSTTEIEEGSDGIWNIVGGKPSCRRNFSLEVMLLDSSGQPVLKELEVVASLIYAESGEAVEKSSDEEAPLLASYDGVEFASSDRPSKLLNGRASFKLKISQLSSKCDNKLFRIRFCIPKFEGYPFFEALSSPIRCISRSRTTRTSTLMWKRSAVHGLDGSRPSGLDNGTSEHEHVSIDEEKPSPLLKRIKVGQDRVLPNSNDDRPLRQPDEECNSHSFTANEAENGFGTNLRERPKNNGSRRASPSDSASTQARHLAPNRTTTSGNPISDVNIFKYCLAGLPERSHLLKEIATSVSQEEVSEFADHVSLYSGCLHHRHQILMSRKLIEEGIQAWNSISQNKHHVQWESVAFEIEEQFMRISGCSSRSLTQQDVELLRRISGCHEYLARENFERMWCWLYPVAFTLSKQWINAMWSSLSPKWIEGFITKEEAELSLQSPTGLQEPGTFILRFPTSRSWPHPDAGSLVVTYVGNDYALHHRLLTLDHFFSSAEGKKNMRSLQDMLLAEPELSRLGRHLPVKLRTYCTYRSRFGTNITGMSEPLEN 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10221498 10227269 + Carg14757-RA Car01g01092 141956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01092 736 MobiDBLite consensus disorder prediction 434 458 - -
Car01g01092 736 MobiDBLite consensus disorder prediction 348 458 - -
Car01g01092 736 MobiDBLite consensus disorder prediction 405 427 - -
Car01g01092 736 MobiDBLite consensus disorder prediction 360 381 - -
Car01g01092 736 ProSiteProfiles Src homology 2 (SH2) domain profile. 614 696 IPR000980 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01092 - - - bhj:120086005 1197.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g12 . . . . Bpe09g00273 . . Bma13g00915 . . Cma01g01277 . Car01g01092 . . . Cpe02g00648 Bhi09g03581 Tan01g4242 . . . . . . . . . . . . . . . . Lsi04g01968 Csa04g02247 . . . Blo10g00716 . Bda12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2870 None None None None Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01092 Car_Chr01 FPKM 80.819191 82.102219 32.629639 33.850933 27.854836 21.949053 28.780523 21.711824 22.199324 18.896288