Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01111 CGTATACACTTTTTGATAATTTTGTTCATCCCAACCGATCTGTTTGGCTTTGGTCCGAGCTCTGCAACAGGTGGCCACAGCCATGGCCAGAATAGCTTGCGCTCACATTATTCCGTCTCTGCTTTCCCCTTCGAAATCCTTCAGTTAACTCGCACTCTCTCCTCAGGAGCTTCTCATTTCAGCCATGTTACGGTGGTTGGCCGTCGTTTCTCTGATACATATAAGTTCAGTACGAGCCTCAGAGCCGGCATCGTTGGCCTCATCAATGTTGGAAAATCAACGCTCTTCAATGTCGTCGTTGAAAATGGCAAGGCTCAAGCAGCTAAATTTCCTTTCTGTACAATAGAGCCCAACGTAGGAGTAGTTGCAGTTCCAGATCCTCGTCTGCATCAACTTTCTGATCTCAGCAAGTCTATACGAGCGGTCCCAGCATCCATAGAGGATTGGGAATATAACTTCTTATCCCATGTTCGTGAGGTGGAGGTCCATACTTCAGATGAATTGGCTAGTATATTTCTCTGCAATATCAACTGCCCGGCTGTGCGCTGTTTTGAGGATAACGACATTGTTCACGTGAATGGGAAAATTGATCCAAAAACTGGTATTGATTTGATTAACTTAGAGCTTTATTTTTCAGATCTGGACCAGAAGAACATGCCTAGGGTTTATCCTAGTTTTCTAGCCAATTCCAAAATCTGA 699 44.49 RIHFLIILFIPTDLFGFGPSSATGGHSHGQNSLRSHYSVSAFPFEILQLTRTLSSGASHFSHVTVVGRRFSDTYKFSTSLRAGIVGLINVGKSTLFNVVVENGKAQAAKFPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEDWEYNFLSHVREVEVHTSDELASIFLCNINCPAVRCFEDNDIVHVNGKIDPKTGIDLINLELYFSDLDQKNMPRVYPSFLANSKI 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10359601 10362177 + Carg14776-RA Car01g01111 141975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01111 232 Pfam 50S ribosome-binding GTPase 82 134 IPR006073 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01111 K19788 OLA1; obg-like ATPase 1 - cmax:111480358 237.269
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01111 Car09g00649 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01111 Car-Chr1:10359601 Car13g00377 Car-Chr13:6331056 2.93E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g990 . . . . . . . . . . Cma01g01304 Cma09g00739 Car01g01111 Car09g00649 . . Cpe02g00628 . . . . . . . Cla11g01598 Cam11g1664 Cec11g1693 Cco11g1689 Clacu11g1822 Cmu11g1634 Cre11g2050 Cone6ag0279 Cone9ag0315 . . Lsi04g01876 . . Cme07g00745 . . . . . . . . . Cmo01g01359 Cmo09g00731 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019939 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01111 Car_Chr01 FPKM 57.357479 64.525131 55.841717 54.757984 25.325901 21.897223 24.128918 71.775009 71.178055 77.031761