Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01171 ATGTCGATGCCGTCGCCGTTGCCTTTTCTCATCCGGCGGCACTCAAGTGACGATTTAAAGAACTTGACATCGGTTTCCAGCAGCCTCTTGCCCGCTTTTGGAACGGTAGTGAATGGTGGATACACGCACCTGAATAAATTCGTGGTAGTTCCATATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTGGTGTTAGTGGTGTACTCTGCGTGGGCATCTCCCTTTGAGCTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATCTGTTGGTGGATGCATTCTTTGCCCTTGATATCGTGTTGACCTTTTTCGTCGCGTACTTGGATAAATCCACCTATCTCCTCGTTGACGATCATAAGAAGATAGCTGTACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTACAGGCACTACACAGAATTTTGACTGGAAAGATGTACCGCAGTGACGCCTTCGGTTTCCTCAATTTACTTCGGTTCTGGCGACTAAGACGTGTTGGTGAGCTCTTCACAAGGTTGGAGAAAGACATACGCTTTAGTTACTTCTTAACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTATTGGCTAGCAGTTCATCATAAAGAGCCAGGAAACACATGGATTGGAGTTGAAGTTGAAGATTTTGAGAACAGGAATATCTGGGTTGGGTACACGTATTCGATATATTGGTCCATTGTCACACTTACTACTGTCGGTTATGGCGACTTGCATGCAGTTAATTTAGGGGAGAAGCTTTTTAGCATCTGCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATCGGAAACATGACAAATCTCATTGTTCATGGTGCTGTCCGAACATATATCATGAGGGATTCCATAAATGAGATACTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAGCTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCGATCAGATCCAGTATTGCCCAGCACCTTTTCGGACAAACAGTTGAGAGTGCGTACTTATTCAAGGGGATCTCTGACGATCTCATCGTTCAATTGGTATCTGCGATGAAAGCAGAGTACTTTCCACCTAAACTTGATATCATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATATGATAACGTACAAGAATGGAAATGAACAGGTTTTGGCAAATCTGGAATCTCCACAAATGGCAGGGGAAATAGCTGTGATGTTGAATATTCCACAGCCATTTACAGTGAGGACTAAAAGACTCTCCCAAGTCATCAGGATCAGTCACCATCATTTTAAGCAAATTTTACAATCAAACAATGAAGATGGAAAAATCCTTCTCTCCAACTTCACTGAGCACTTGAAGGGGTTAAAAAGGGGGGAGCAAAACGAAATACCCTACTTTGCAGAATTTCTGGAAGACATAAATACAGAGCGTACAGAGCCAAATGAGAAACAAAATCAAAGAGTACCTTATCATGGTGATCAAAAAATGGAAGGAAGACCAAAAGCATCGAAACAATTTCCACCTACAAATCCCATCAGGGTGATAATCCACGGGCACCATCCAGATGAAAGTACAGAAGACGGCAACAGTATGGGAAAACTGATACTTCTGCCTAAGTCAATTGAAGAACTTTTCGGAGTGGCAGGGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTCATGGCTGATGGCTCTAAAATAGAGGACTTGAATGTTTTAAGAGAGGGTGATCATTTATTCTTTGTTTGA 1881 42.85 MSMPSPLPFLIRRHSSDDLKNLTSVSSSLLPAFGTVVNGGYTHLNKFVVVPYDRRYRWWQTFLVVLVVYSAWASPFELAFKKVATGSLLPVDLLVDAFFALDIVLTFFVAYLDKSTYLLVDDHKKIAVRYLTSLWFPMDVASTLPLQALHRILTGKMYRSDAFGFLNLLRFWRLRRVGELFTRLEKDIRFSYFLTRLAKLICVTLLAVHSAGCFYYWLAVHHKEPGNTWIGVEVEDFENRNIWVGYTYSIYWSIVTLTTVGYGDLHAVNLGEKLFSICYMLFNIGLTSYLIGNMTNLIVHGAVRTYIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFGQTVESAYLFKGISDDLIVQLVSAMKAEYFPPKLDIIIQNEIPTDFYILVSGSVDMITYKNGNEQVLANLESPQMAGEIAVMLNIPQPFTVRTKRLSQVIRISHHHFKQILQSNNEDGKILLSNFTEHLKGLKRGEQNEIPYFAEFLEDINTERTEPNEKQNQRVPYHGDQKMEGRPKASKQFPPTNPIRVIIHGHHPDESTEDGNSMGKLILLPKSIEELFGVAGKRFGKRGSSILMADGSKIEDLNVLREGDHLFFV 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10937845 10945396 - Carg21151-RA Car01g01171 142035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01171 626 Pfam Cyclic nucleotide-binding domain 397 481 IPR000595 -
Car01g01171 626 Pfam KHA, dimerisation domain of potassium ion channel 557 625 IPR021789 -
Car01g01171 626 ProSiteProfiles cAMP/cGMP binding motif profile. 376 495 IPR000595 -
Car01g01171 626 MobiDBLite consensus disorder prediction 520 551 - -
Car01g01171 626 MobiDBLite consensus disorder prediction 520 544 - -
Car01g01171 626 Pfam Ion transport protein 56 302 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car01g01171 626 ProSiteProfiles KHA domain profile. 557 626 IPR021789 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01171 Car09g00415 CCT
Car01g01171 Car09g00415 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01171 Car-Chr1:10937845 Car13g00439 Car-Chr13:6831686 0 dispersed
Car18g00432 Car-Chr18:2735377 Car01g01171 Car-Chr1:10937845 1.39E-08 dispersed
Car01g01171 Car-Chr1:10937845 Car09g00432 Car-Chr9:2401581 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01171 K21867 - csv:101215177 1074.69