Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01172 ATGGTTGATGCGCTTCCGTCGTATCGGTCACCGGTGGCGGTGGAGGAGGCCGGAGAGCGGTCGGCGAAAGAGGAAAATGTCGGTGGTTCTGTAATGGCGGTTGATTTAGATGTGAATCTTGAGGCGGAGGTTGCGAAGTTACGAGGTCAATGGGAGCTGGCGTCGGTTCTGAACTTCTTGAATGTATTCGAGCCGTTAATTGGGAAAAGCTTGAGGATATCGGCGGAAGAGATCGAAAAGGGTTTAATAAAGCCTGAAAGTTCATTAGCTGAACTCCACATTACACTTTTGAAGGGCATACCACCTGTAAGTAAAATGTTAAATGGTTCTGATGCATGGGTGACTGTTCTCTGTAAGAAGCTCGTGGCATGGTGGCCATGGGTTGCTGAAGGGGAGATTCCAATCAAGGCTTTTAAAGGAGAGGAGATATCAAATTACAAGAAACTAGATCCTAAGGAACGCTTGCTGCTTCTGAAAGCTCTTTGTGAAATTCGAGCTGATCAAGATGATACAATATCTTATATTAGCGACTGTGTGAAAGATAGAACTCAAATGTCTTGCTTCCAGAAAGATAGATTTGGAGGAGATGGAAATAAAATTTCTTATTGGTATGATGGAAATCCATTTGTTGGTTATAGACTATACAGGGAAGCTATCAAATGTGAGAAAAAGACAAAAGGTAAACAGAGGGGAAGTTTTTCCCTTCCAAAGTTTAGCATTCAATGGGAAACAATGGCCACAAATCTCGAGGAATTTCATAAAGTTAAAGACAACCTGTTGTGCAGCAAAATCACTAGTGAAGTTTCGGTTGGAAAGAAAATTGAATCAGACGCCATTCCTGTTCTTGAGAAACTCCAGAAGAAGAAAGAAAGATTATTGAAACGTAAGCATAGGGAGGAGATGCTCTTGAACGACTTTAAGAAGCCCTGCATAGTTGGAATTACACGCACTTGTCGCATTCGTGCACCCGTGAACTATACATTTGAGGAGTACAATCGGGCTATTGATGATGCCATACGGCTATCTGGGAACGAGGAAACAACCGATGAAAAAGAGCAAGGGATGATGCATCACAGGCGCAGTAGAAAAGATGTTGCCACTAGTGAGAATCCTGAAACAAGGATGAAATCAGAGGATGCCTCTGGAAATAGCAGCGAGTGCAGCAACAACGATGACAGTGGTGGAAGTAACTCGCATAAAGAAGTCGATCACGACAGTGTCGATGACACCGAAAACAATGACTGTGAAGACAAAGACGACAACAATGACGATTCTGATTCAGATTATTCCGAGGCAGAAGAGAAGAATGAAACGCTTCACTCCAAAGTAGCGACCGATGTCAAAAGGGCATGCAGTAAGAGAGTGGATAGAAGCAGGAACCATCTTAGTAATCAAAATGGTAAGGGAGGTGCCAAAAGTAGGCTCAGACAAAGGCCAGTTCTCAACGCTGCCCTTCATTCTGCTGTTGTGGCTGATTCAGATGATGAACATTGA 1494 43.44 MVDALPSYRSPVAVEEAGERSAKEENVGGSVMAVDLDVNLEAEVAKLRGQWELASVLNFLNVFEPLIGKSLRISAEEIEKGLIKPESSLAELHITLLKGIPPVSKMLNGSDAWVTVLCKKLVAWWPWVAEGEIPIKAFKGEEISNYKKLDPKERLLLLKALCEIRADQDDTISYISDCVKDRTQMSCFQKDRFGGDGNKISYWYDGNPFVGYRLYREAIKCEKKTKGKQRGSFSLPKFSIQWETMATNLEEFHKVKDNLLCSKITSEVSVGKKIESDAIPVLEKLQKKKERLLKRKHREEMLLNDFKKPCIVGITRTCRIRAPVNYTFEEYNRAIDDAIRLSGNEETTDEKEQGMMHHRRSRKDVATSENPETRMKSEDASGNSSECSNNDDSGGSNSHKEVDHDSVDDTENNDCEDKDDNNDDSDSDYSEAEEKNETLHSKVATDVKRACSKRVDRSRNHLSNQNGKGGAKSRLRQRPVLNAALHSAVVADSDDEH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10945730 10953529 + Carg21152-RA Car01g01172 142036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01172 497 MobiDBLite consensus disorder prediction 432 461 - -
Car01g01172 497 MobiDBLite consensus disorder prediction 377 395 - -
Car01g01172 497 MobiDBLite consensus disorder prediction 342 479 - -
Car01g01172 497 MobiDBLite consensus disorder prediction 408 431 - -
Car01g01172 497 Coils Coil 282 302 - -
Car01g01172 497 MobiDBLite consensus disorder prediction 342 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01172 - - - mcha:111012575 681.789
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01172 Car09g00435 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01172 Car-Chr1:10945730 Car10g00158 Car-Chr10:753644 4.17E-99 dispersed
Car01g01172 Car-Chr1:10945730 Car09g00435 Car-Chr9:2435945 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g394 Blo01g01356 . Bda01g00716 . . . . Bma01g02144 . . Cma01g01543 . Car09g00435 . . . Cpe06g00371 . . . . . . . . . . . . . . . Cone7ag1744 . . Lsi04g02172 Csa03g04378 Chy04g00324 . . . . . . . . . . Cmo01g01593 Cmo09g00497 . . Car01g01172 . . . . . . . . . . . . . . . . . . . . Cme04g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010520 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01172 Car_Chr01 FPKM 17.428293 15.492356 49.343048 50.399422 11.049291 13.362186 12.027027 63.047421 63.949059 59.519695