Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01175 ATGCCGGGGCTTACCTGCAATGCCTGTAACAAAGAATTTATAGACACCGAGGAGCAAAAGCTTCACTACAAATCCGAATGGCATCGGTACAATCTCAAGCGCAAGGTGGCTAATGTTCCTGGGGTTACAGAGGCATTATTCTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAGAGACCGCAATGTCATACTCTTGTGGCCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCCAAGAGTCACATCATCCGAGCTTCACAAGGAACACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGAGAATTTCTAATAGGGTGCCCCAACAAAATGAGGAAGAGAGTGAGGAGTGGGAAGAAGCTGATTCTGACGAAGACATGATCGATGAGAATGACGATGAGGGTGAAGACAATGATTCTGATGCCATTGAGGTGGACTTGGATCCATCGTGCTGCTTCATGTGTGATTTAGAGCATGATACCATCGATAGCTGCATGGTTCACATGCATAAACAACATGGATTCTTTATTCCTGATGTTGAATATTTGAAGGATCCGAATGGCTTCCTTACATACCTCGGTCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAACGATAATCGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCTAAAAGCCATTGCAAAGTGCATTATGGCGATGGAGATGAGAACGAAGAAGTAGAATTGGAAGAATTTTATGACTACAGTAGCAGTTACGTGGATGGAAGTGGCAACCAGCTAGTAGCATCAGGGGATGGGGCCAATTCTGTTCAGCTTGGTAGTGGTGGAGCTGAGCTCATCTTAGCTCAAAGAACTACCGATCGGCAATCGACCAAAACGCTTGGTTCCAGGCAATTTATACGTTATTATCGTCAAAAACCACGACCATCTCCTGCAAATGATGCAGCCATAACTGCTGCATTGGCAGCAAGGTACAAGAGCATGGGATTGGCAACTGTCCAGTCGAGGGAGAGGACGATCAGGATGAAGGTGATGAAAGAAATTAATCGAACTGGATTGGAAGCCATGCGTACCAAAGTCGGATTGAAGAACAACGTAATCCGAAACCTGCCTAATAATGTTACATACTAG 1179 44.87 MPGLTCNACNKEFIDTEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSETAMSYSCGLCSKAYRSAQAHAQHLKSKSHIIRASQGTHDQEVEKPIIKPLPQRISNRVPQQNEEESEEWEEADSDEDMIDENDDEGEDNDSDAIEVDLDPSCCFMCDLEHDTIDSCMVHMHKQHGFFIPDVEYLKDPNGFLTYLGLKVMRDFRCLYCNDNRLPFSSLEAVRKHMEAKSHCKVHYGDGDENEEVELEEFYDYSSSYVDGSGNQLVASGDGANSVQLGSGGAELILAQRTTDRQSTKTLGSRQFIRYYRQKPRPSPANDAAITAALAARYKSMGLATVQSRERTIRMKVMKEINRTGLEAMRTKVGLKNNVIRNLPNNVTY 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10963133 10966376 + Carg21155-RA Car01g01175 142039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01175 392 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Car01g01175 392 MobiDBLite consensus disorder prediction 127 155 - -
Car01g01175 392 MobiDBLite consensus disorder prediction 114 155 - -
Car01g01175 392 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Car01g01175 392 Pfam C2H2 type zinc-finger (2 copies) 166 267 IPR041661 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01175 Car-Chr1:10963133 Car09g00449 Car-Chr9:2509640 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2878 PF12756 zf-C2H2_2 7.60E-26 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01175 K14816 - csv:101219700 635.18