Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01194 ATGGCGGTCGATCTGATGAGTTTTCCGAAGATGGATGATCAGATGGCTATACAAGAGGCCGCATCGCAAGGATTGAAGAGTATGGAGCATCTCGTTCGTCTTCTTTCTCACAAGCAACCTTCAAACCATGTCGATTGCTCTGATCTAACTGATGCGACTGTTTCGAAGTTCAAGAAAGTGATTTCGCTTCTCAATCGGACTGGCCACGCCAGGTTCCGGCGAGGTCCGGTATCTAATTCGACCTCTTCCTCCTCGTCTGGTTCAGTTCCTCAAAATCAGGCGATGAACAACACTCCTACTCCGTTTACTTCATCGGCGACGGTTTCTGCTCCGTCGTTCACCGCTCCAGTCACCGTCGCTCAGCCACTGACGAAGGTTACTGCGGCGGCGAACTTTCTCCAGTCGCAGCCTCAGAGTATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGATACCTTCAGCGTCTCTTCGAGTTCTTCGTTTATGTCCTCTGCTATCACCGGAGACGGCAGTGTATCCAACGGAAAATTAGGAACCTCGATCTTTCTGGCACCGGCTCCGTCTGCTTCCGGCGGAAAGCCGCCACTCTCGGCGCCGCCATACAAGAAGAGGTGCCACGAACACGATTATTCCGAAGATTTATCCGGGAAATTCTCCGGTTCTACCTCTGCTTCCGGCAAGTGCCATTGCTCAAAGAGAAGGAAAAACCGTATGAAGAAGACGATCCGAGTCCCGGCGATTAGTTCCAAAATCGCCGATATTCCACCGGACGAGTACTCATGGAGAAAATACGGTCAGAAGCCGATCAAGGGATCTCCATACCCACGTGGATATTACAAGTGTAGCTCGATGAGAGGATGTCCAGCGAGGAAACACGTGGAGAGAGATCCAAATGATCCAGCGATGTTGATTGTAACGTACGAAGGAGAGCACCGCCATACACAGAGCTCCTTGCCGGAAAATATGGCCACCGGAGTAGCTTTAGTTTTTGAGTCAAGTTGA 1041 50.14 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLVRLLSHKQPSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSNSTSSSSSGSVPQNQAMNNTPTPFTSSATVSAPSFTAPVTVAQPLTKVTAAANFLQSQPQSMTLDFTRPNILNSNPKGTDLEFSKDTFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPSASGGKPPLSAPPYKKRCHEHDYSEDLSGKFSGSTSASGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMATGVALVFESS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11055619 11057586 - Carg21175-RA Car01g01194 142058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01194 346 MobiDBLite consensus disorder prediction 74 106 - -
Car01g01194 346 Pfam WRKY DNA -binding domain 270 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01194 346 Pfam Plant zinc cluster domain 215 266 IPR018872 -
Car01g01194 346 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01194 346 MobiDBLite consensus disorder prediction 71 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01194 Car-Chr1:11055619 Car09g00212 Car-Chr9:1055588 8.28E-77 dispersed
Car10g00344 Car-Chr10:1703899 Car01g01194 Car-Chr1:11055619 3.23E-86 dispersed
Car01g01194 Car-Chr1:11055619 Car09g00458 Car-Chr9:2547682 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2879 PF03106 WRKY 5.70E-26 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01194 - - bhj:120087087 588.956