Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g01208 | ATGGATTCAAAGAAGTCCAACAAAATCAGAGACATCGTTAGGCTTCAACAGATCCTGAAGAAGTGGCGGAAGTTGGCGAACTCAACAAAGACGGCGAATAGATACTCCGGCACGGCGGCGGGATCTGGCGGAAAGAGCATGAAGTTTCTGAAGCGGACGCTCTCAGCCGGATGCGATGTTTCCGGCGCGTCCGTACCGAAAGGATCTTTGGCGGTGAGCGTCGGTGAGGAGCAAAAGCGATTTGTGATTCCGACGCAGTACTTAGGGCATCCGGCGTTTGAGATTCTGTTAAGAGAGGCGGAGGAGGAGTTCGGATTTCAACAAACTGGAGTTCTGAGGCTGCCTTGTGAGGTAACGGTGTTTGAACATGTGGTGAGATTGGTGGAGAGGAAGAAGGGAGATTTGTTCGGCGGAGAGGAAGTTTTGAGCCTTTGTTCGTTGGAATCGCTGCTGCTTACGCCGTCGCACCGTCCGCAGAGTCCAATGTGCAGATAG | 495 | 52.53 | MDSKKSNKIRDIVRLQQILKKWRKLANSTKTANRYSGTAAGSGGKSMKFLKRTLSAGCDVSGASVPKGSLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFEHVVRLVERKKGDLFGGEEVLSLCSLESLLLTPSHRPQSPMCR | 164 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11133570 | 11134064 | - | Carg21189-RA | Car01g01208 | 142072 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g01208 | 164 | Pfam | Auxin responsive protein | 21 | 127 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01208 | Car-Chr1:11133570 | Car02g00223 | Car-Chr2:1451573 | 7.77E-25 | dispersed | |
| Car03g01035 | Car-Chr3:8532501 | Car01g01208 | Car-Chr1:11133570 | 4.83E-20 | dispersed | |
| Car19g00600 | Car-Chr19:7395660 | Car01g01208 | Car-Chr1:11133570 | 2.52E-10 | dispersed | |
| Car19g00868 | Car-Chr19:9035946 | Car01g01208 | Car-Chr1:11133570 | 6.38E-20 | dispersed | |
| Car20g00684 | Car-Chr20:3920385 | Car01g01208 | Car-Chr1:11133570 | 1.94E-22 | dispersed | |
| Car04g01897 | Car-Chr4:11110863 | Car01g01208 | Car-Chr1:11133570 | 7.06E-26 | transposed | |
| Car01g01208 | Car-Chr1:11133570 | Car09g00472 | Car-Chr9:2637682 | 8.40E-100 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g01208 | K14488 | - | csv:101216710 | 241.506 |