Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01232 ATGGCGGTCGCCTCTTCCCCTCGTGAGAAGTATGTTTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTTGAGTTTATGGAGAAGGTCTCGGCCGCCATAGAAAACGAGGAGCTTACCGTCGAGGAGCGGAACCTTCTCTCTGTTGCTTACAAGAATGTTATTGGAGCTCGTAGAGCTTCCTGGAGGATCATTTCTTCCATCGAGCAGAAGGAGGAGAGCCGAGGGAACGATGATCATGTTTCCGTGATCAGAGAATACAGATCTAAGATCGAGAGCGAGCTCTCTAACATCTGTGATGGGATCCTCAAGCTTCTTGACTCCCGCCTTATTTCCTCTGCTGCTTCTGGAGATTCCAAGGTGTTTTATCTCAAAATGAAGGGTGATTACCATAGATACCTGGCTGAATTCAAGACCGGAGCAGAACGGAAGGAGGCTGCTGAAAGTACCCTCACTGCTTATAAATCTGCTCAGGATATCGCAAATTCTGAACTTGCTCCTACTCACCCCATACGACTTGGGCTGGCTTTGAACTTTTCAGTGTTCTATTACGAGATTCTGAATTCCCCTGATCGAGCTTGCAGCCTTGCCAAACAGGCTTTTGATGAAGCAATTGCTGAGTTGGATACACTGGGCGAGGAATCATACAAGGACAGCACTTTGATCATGCAACTTCTTCGTGACAACCTCACCCTATGGACTTCAGACATGCAGGATGATGGAGATGAGATTAAAGAAGCAGCTCCCAAGCGCGACGACGAATAA 777 48.65 MAVASSPREKYVYMAKLAEQAERYEEMVEFMEKVSAAIENEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIREYRSKIESELSNICDGILKLLDSRLISSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKSAQDIANSELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDEIKEAAPKRDDE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11298726 11301825 + Carg25636-RA Car01g01232 142096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01232 258 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Car01g01232 258 Gene3D - 1 252 IPR036815 -
Car01g01232 258 SMART 1433_4 8 250 IPR023410 -
Car01g01232 258 PANTHER 14-3-3 PROTEIN 4 253 IPR000308 -
Car01g01232 258 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Car01g01232 258 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Car01g01232 258 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Car01g01232 258 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Car01g01232 258 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Car01g01232 258 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Car01g01232 258 Coils Coil 14 41 - -
Car01g01232 258 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Car01g01232 258 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Car01g01232 258 PIRSF 14-3-3 2 250 IPR000308 -
Car01g01232 258 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 4 253 - -
Car01g01232 258 Pfam 14-3-3 protein 14 238 IPR023410 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01232 Car05g00457 CCT
Car01g01232 Car09g00495 CCT
Car01g01232 Car12g00154 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01232 Car-Chr1:11298726 Car05g00505 Car-Chr5:2929181 8.52E-133 dispersed
Car01g01226 Car-Chr1:11259232 Car01g01232 Car-Chr1:11298726 1.22E-114 proximal
Car01g01232 Car-Chr1:11298726 Car12g00154 Car-Chr12:881107 7.58E-176 wgd
Car01g01232 Car-Chr1:11298726 Car05g00457 Car-Chr5:2622520 1.27E-175 wgd
Car01g01232 Car-Chr1:11298726 Car09g00495 Car-Chr9:2767971 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01232 K06630 - csv:101210822 489.189