Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g01260 | ATGTTCCCAAAACCCCACCATCAACCACCGCCCCATTTCCAGCCCTTTCCCCGCTCCTTCGCCGTCGCGGCCACTCCGCCACCGCGAGATTCTTCCACCGCCGCCGATGACGACTCCACTACCGGCCACTCGCCTCTCACGCACGCTATGCTCCCTAAAGAACCGGCCTCCGGCGGCGACGGAGCTTCTATCGAGGTCGTTCGCCGTCCCCGTGGTCGACCTCCTGGATCCAAGAACAAGCCGAAGCCAGCCGCCGTTGTCGTCGCTGCACGCGACGCCGAGCCGGCGATGAGTCCTTATGTGCTCGAAGTTCCTGGCGGCAGTGATATCGTCGAGGCTATTTCCCGATTCTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTATGGAAGCGTCGCCGATGTCACACTCCGGCAGCCGTCCTCATCTCCGGTGGCGACCGTCACTTTCCATGGACGATTCGATATCCTTTCCGTCTGCGCTACTTTTGTTCCTCATACGACGTCGTTTCCAATCCCTAACGGATTCACCATCACGCTAGCAGGGCCGCAGGGCCAGATCTTCGGCGGTTTGGTTGCCGGAGCTTTAATCGGCGCCGGAACCGTCTTTGTAATAGCTGCCTCATTCAACAATCCCTCCTATCAACGGCTTCCATCAGAGGACGAGGTCAGAAAATCAGGCTTCAGCGATGTCGAAGAAGGTCACTCTCCACCGATCTCCGGTGGAAAAGATAGCGAAAACACCAACGCCGCAGCGGATACCTGCGGCCTGTTGCCGATGTACAGTACTCACTCTTCCTCCGATGCAATATGGTCTCGACAACCAGCGGCGCCGCCGCACCATCGCCAGTACTAA | 861 | 58.77 | MFPKPHHQPPPHFQPFPRSFAVAATPPPRDSSTAADDDSTTGHSPLTHAMLPKEPASGGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAARDAEPAMSPYVLEVPGGSDIVEAISRFCRRRNTGLCILNAYGSVADVTLRQPSSSPVATVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGALIGAGTVFVIAASFNNPSYQRLPSEDEVRKSGFSDVEEGHSPPISGGKDSENTNAAADTCGLLPMYSTHSSSDAIWSRQPAAPPHHRQY | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11456219 | 11457079 | - | Carg20848-RA | Car01g01260 | 142124 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g01260 | 286 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Car01g01260 | 286 | ProSiteProfiles | PPC domain profile profile. | 94 | 234 | IPR005175 | - | |
| Car01g01260 | 286 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
| Car01g01260 | 286 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
| Car01g01260 | 286 | MobiDBLite | consensus disorder prediction | 218 | 253 | - | - | |
| Car01g01260 | 286 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 99 | 213 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01260 | Car-Chr1:11456219 | Car05g00497 | Car-Chr5:2875366 | 4.91E-86 | dispersed | |
| Car10g00817 | Car-Chr10:4510276 | Car01g01260 | Car-Chr1:11456219 | 2.17E-47 | dispersed | |
| Car01g01260 | Car-Chr1:11456219 | Car12g00177 | Car-Chr12:1096114 | 2.55E-91 | wgd | |
| Car01g01260 | Car-Chr1:11456219 | Car09g00523 | Car-Chr9:2938508 | 3.03E-172 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g01260 | - | - | jre:109013700 | 290.426 |