Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01275 ATGGAGGATAGGAATGTTCTGTTTGGTAAATATGAGATCGGGAAGTTGCTTGGGAAGGGAACTTTTGCGAAGGTGTATTATGGAAAAGAATTGGAATCTGGTGAAAGTGTGGCGATTAAGGTTTTAAACAAGAATCAGGTTAGGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGACTTGTTCGTCATCCGAACATCGTTGAGTTAAGGGAAGTAATGGCGACGAAGACGAAGATCTTCTTTGTAATGGATTATGTTCGCGGTGGTGAACTTTTTGCCAAAGTTGCAAGAGGCAAACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCCGTCGATTACTGTCACAGCCGTGGAGTATCTCACCGCGATTTGAAGCCAGAGAATCTGTTGCTGGATGAGAATGGAGATCTCAAGATCTCCGACTTTGGACTTTCCGCCTTGCCAGAACAGCTTCGGAACGACGGCCTTCTCCACACGCAGTGCGGTACTCCGGCGTACGTCGCACCGGAAGTACTAAGAAGAAAGGGCTACGACGGGGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATAACGATGTTCAAGAAGGTTTTCAAGGCCGAATTCGAGTGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTAATTTCAAAAGTCCTCGTCGTAGATCCAGAAAGACGAATCACAATCGGCGAAATGACGCGAGTTCCTTGGTACCGGAAAAATTTCTCAAGATCGCTCTCATTCACAATGAAGGAAATAACCGCAGAGAAAACAGAGGATTTCGATTCCGATAGTCCAAAACTATCGACGCCAAAATTCTTCAATGCGTTTGAGTTGATATCGTCAATGTCATCCGGATTCGATCTATCTAACTTATTCGAGAACAAAATGAAGGCAGGATCCATGTTCACATCGAGATGCACGGTGCCGACGATCATGGAGAAGATCGAGACGGTGGCGAAGAGACTGAGCTTCAATGTATCGGAAGTGAAAGATTTCAAGCTCCGGCTGCAAGGTCAGACGGAGGGGCGAAAAGGCAAGCTGTCAATGACGGCGGAAGTGTTCGAGATAGCGCCGGAAGTTGCCATAGTGGAATTTTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTTCGTCCGGCGTTGAAAGACATCGTTTGGACGTGGCAAGGTGATTGTGCCGCTAACGTTGACGGACATAACGGCCGATTTGACGGTGACGAACGTTTGTGA 1332 47.15 MEDRNVLFGKYEIGKLLGKGTFAKVYYGKELESGESVAIKVLNKNQVRKEGMMEQIKREISVMRLVRHPNIVELREVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIITMFKKVFKAEFECPPWFSAESKRLISKVLVVDPERRITIGEMTRVPWYRKNFSRSLSFTMKEITAEKTEDFDSDSPKLSTPKFFNAFELISSMSSGFDLSNLFENKMKAGSMFTSRCTVPTIMEKIETVAKRLSFNVSEVKDFKLRLQGQTEGRKGKLSMTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGDCAANVDGHNGRFDGDERL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11561646 11562977 + Carg10763-RA Car01g01275 142139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01275 443 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01275 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Car01g01275 443 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Car01g01275 443 PANTHER - 1 432 - -
Car01g01275 443 SUPERFAMILY Protein kinase-like (PK-like) 7 291 IPR011009 -
Car01g01275 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01275 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Car01g01275 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 432 - -
Car01g01275 443 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01275 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Car01g01275 443 Gene3D Transferase(Phosphotransferase) domain 1 91 272 - -
Car01g01275 443 CDD CIPK_C 302 416 - -
Car01g01275 443 CDD STKc_SnRK3 10 264 - -
Car01g01275 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Car01g01275 443 Pfam NAF domain 298 354 IPR004041 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01275 Car-Chr1:11561646 Car14g00954 Car-Chr14:5778599 0 dispersed
Car06g00959 Car-Chr6:7380387 Car01g01275 Car-Chr1:11561646 9.70E-60 dispersed
Car01g01275 Car-Chr1:11561646 Car10g00439 Car-Chr10:2206179 0 wgd
Car01g01275 Car-Chr1:11561646 Car02g00850 Car-Chr2:6128779 8.62E-180 wgd
Car01g01275 Car-Chr1:11561646 Car09g00364 Car-Chr9:1988779 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88609 PF00069 Pkinase 7.60E-74 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01275 - - csv:101213773 808.135