Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01277 ATGGCCTTATTTCGCAAATTCTTTTATCGGAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTTTTGGAAGAAGACGAATACAAAGTCTATATTGGAGGTATCGTGGGACAACTTCGTGAAAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGAATCAAAGCCTCATCACTAATATATTATCTATGTATGATATGACTGTCATGGACTATCCTCGACACTATGAAGGTTGCCCTCTTCTCACCATGGAGATGATCCACCACTTCTTAAGATCCTGTGAAAACTGGCTCTCACTTATGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGATGGCCGGTCTTGGCTTTCATGTTGGCTGCTCTTTTGATTTATAGGAAGCAGTATGCTGGGGAGCAGAAAATTTTGGACATGATCTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCGCAATTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGATCAGAATGGCCTCCGCTTGGCAGGGCGCTTACTCTAGACTGCATAATTATTAGACTTATTCCTAATATGGATGGTGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGGTGACCGAACCTCCAAAGTATTGTTCTCAACACCCAAAAGGAGTAAACTTGTTCGCCAGTATAAGCAGGTTGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTTTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGGTGTTTCGAGTTATGTTTAATACGGCATTTATAAGGTCAAATATTTTGATGCTTAACCGGGATGACATCGATATCTTATGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCTAACGCATCGCGTATTTCAATTGAATTGCCAAATATTGAGGAGAAAGAAGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGAATGGCTAAGCCCCAAGGCAGAAGCAGCTCTTACTGCGCTTCAGAAAATGACAGCTTCAAATTTTCTTCAAGAGAAACTTATTAGTTTCAACTCTTTAGACAGAAGCCAGTTGCTTGACTTATCTTTAGAAAAACTAATATCGGAATCAGAGACATCTGAAGACTATATTAGAAGTCCCCAATTGAAGATACAAAAAAATCAATCCGAGCCGTATTCTGAACTATATCTCACTGAAAGATCAGTGAGATCGAAGATTGAAACCCCAGAATTGCAGGTTGCTCTCGAACTACCACCTCAGACTGAAATCGTTACCCAAAGAATACCTCAACCTTCCATGTCTACACCAGTCTCCTTCCCTAGTTCTGTGCAAGGTTCACCTTCCCCAAAATTAAGATATCCCAGTGCACCTTCTGTTCCGGGCAATACAGCATTATTACACGATTATTCCGAATTTAGTGGTAAGGAAGTCATACATCCAGCGACAATATCTTCACCATCATCTTATCGCTTGGCTCCAAGTGCTCTAGATTCATATAAATATATTCAACCTGGTAAGCATCCTATTTTGCATTCCCCGCTGGCACTGGAGCCAAGTTCTACATTAGAAAGACCTTCTACCACCACATCAACTTCAACCATTTCTGATCCATTTGTACTCCGCCAACTTTCTTTGAAACCTATTAAACCTTCAATTTCTCAACCGTCTCAAACCACGTCACTAGGGAGAAGTCAATTATTACCATCTTCGTTACAACCAACGCCTAGCTCTTTTCTTAGGAAGTCCACACCTTCATACAGTGAGAGCTTACCTTCGATATCCTCTTCTTCTTTATTAAGATCATGTCCATGTTCTTGTGCCAAGCAATCATTTTGTCTTCCCACTCCTCCCTCTCCTCCCATCTCTCATCTTGATTCATCTTCGTTTTTAGTAACATCTCCATCTTTTGGCAGGATGAATGGTTCATTTTCCCCATCTCCACCACAACCTTCTTCTACAACAATGCTATTGTCCTCGACAAAGACATCAATTCCAGTTGTTCTTCAATCTTCTCCGTCTAATGATCGTTTAGTTTCTTCTCAGTTGCCTAAAAAGAATTTGTCAATTGTCCCTCCCCCTCCACTATCTCCTCATCCTCCTCCTCCATGCTCTAGCCCCAACTTGGGTACTAGTGTTGTCTCGCCAACATCGGTGCCCCCACCGCCACCTCCACCTCTGGCCCCACCCTTGCCCCCACCTTTGAGTTCATCGACTTGTGGTTCTAGTACCATGTCTTTAGGGCCACCGTCGCCACCACCTCCTCCTAGTCCTGCACCACAGGGTTCTACCACGGTAGTCAGGAACTTGAAGGTTGTACCTGGCCCTCCACCTCCCCCACCTCCTCCCTCTCCTAGATCTTCCCCAGATCCTAGTAATGTATCTTTAGCACCGCCTCCTCCTCCTCCTCCTCTTCTGCCTAGTCGTGCACCAAATGTTTCTGCAACAACGCATGTCTCTGGCCCCCCTCCTCCTCCTCCTCCACCTTCTGCCAATTCAGGATCCACCTCAAGTCCAGGTGTTGTAAAGTCAGCTCCACCTGCCCCACCTCCTTCAGGTCTTTCAACGACGGGACCTGCTCCACCTGCACCCCCTCCTTCCTCACAGTCTCACGCTGGCACTAATAACGGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGCTTTACTTGCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACGTGTCTCAACCTAAAAGGTGCAATTTGAAGCCTTACCACTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCAGAGTCACCAAAGAATGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCGGAGTCTGGAGGTTCTGGTAGAAATTCAAATCGCCGAGCCTCAGGGCCAAAACCAGAAAAAGTTCAGCTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGACATGGCGTTAGATGTGGATCAGGTTGAGAACCTAATAAAGTTTTGTCCAACAAAAGAAGAAATGGAATTACTTAAGGGGTACACTGGGGACAAGGATAACTTGGGAAAATGTGAACAATTCTTCTTAGAATTGATGAAGGTCCCACGAGTTGAGGCCAAGCTAAGAGTTTTTTCTTTCAAGATACAATTCGGGTTGCAGGTCTCTGACCTTAGATATAGTCTGAATACTGTCAATTCGGTATCTGAAGAGGCAAGTACGTCGTTTGGACATTTTCACATTTTAAACCCTTTCTCTATTCAGATCAGAAATTCGATAAAGTTGAAAAGGGTAATGCAAACTATTCTTTCGTTGGGTAATGCTTTGAACCACGGAACGGCTAGAGGTTCCGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACGCGAGCCAGAAACAATAAGATGACCCTCATGCATTATCTATGTAAGGTGATCGCTGAAAAGCTACCAGAACTTATAGAATTTCCAAAGGACCTTGTGCATTTGGAAATTTCTACGAAGTGTTGTTTTGTTGGTAAGGCTAATCGTTTGGTTATCATACAGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAAAACGATGGGTCCGTTTCAGAAACTTTTTGCCGGACTTTAAAAGACTTCCTTTCTCACGCCGAGGCCGAAGTGAGGTCTCTCGCGTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCGCTCGCTCTTTATTTCGGCGAGGATCCAGCACGTTGCCCTTTCGAGCAAGTTGTTAATACACTGCTCAATTTCATGCGGATGTTTGTGCGAGCACATGAAGAAAACTGTAAGCAGCTTGATTACGAAAAGAAGAAAGCACAGAAGGAAGCAGCAGAAAAGGAGAAGTTGAAGATTGGTAACCCGAAAAACGAGTCAGGAATCTTGATGAAGACTCCAACCTAA 4221 43.71 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGENQSLITNILSMYDMTVMDYPRHYEGCPLLTMEMIHHFLRSCENWLSLMQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKILDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLGRALTLDCIIIRLIPNMDGEGGCRPIFRIYGQDPFMAGDRTSKVLFSTPKRSKLVRQYKQVDCELVKIDIHCHIQGDVVFECISLDNDLEREEMVFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDANASRISIELPNIEEKEGLPIEAFARVQEIFSNVEWLSPKAEAALTALQKMTASNFLQEKLISFNSLDRSQLLDLSLEKLISESETSEDYIRSPQLKIQKNQSEPYSELYLTERSVRSKIETPELQVALELPPQTEIVTQRIPQPSMSTPVSFPSSVQGSPSPKLRYPSAPSVPGNTALLHDYSEFSGKEVIHPATISSPSSYRLAPSALDSYKYIQPGKHPILHSPLALEPSSTLERPSTTTSTSTISDPFVLRQLSLKPIKPSISQPSQTTSLGRSQLLPSSLQPTPSSFLRKSTPSYSESLPSISSSSLLRSCPCSCAKQSFCLPTPPSPPISHLDSSSFLVTSPSFGRMNGSFSPSPPQPSSTTMLLSSTKTSIPVVLQSSPSNDRLVSSQLPKKNLSIVPPPPLSPHPPPPCSSPNLGTSVVSPTSVPPPPPPPLAPPLPPPLSSSTCGSSTMSLGPPSPPPPPSPAPQGSTTVVRNLKVVPGPPPPPPPPSPRSSPDPSNVSLAPPPPPPPLLPSRAPNVSATTHVSGPPPPPPPPSANSGSTSSPGVVKSAPPAPPPSGLSTTGPAPPAPPPSSQSHAGTNNGNIPSIPGPPSSALLAKGRGLGRLNSKNVSQPKRCNLKPYHWLKLTRAMQGSLWAESPKNDEASKAPEFDMSELESLFSAAAPNSESGGSGRNSNRRASGPKPEKVQLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDMALDVDQVENLIKFCPTKEEMELLKGYTGDKDNLGKCEQFFLELMKVPRVEAKLRVFSFKIQFGLQVSDLRYSLNTVNSVSEEASTSFGHFHILNPFSIQIRNSIKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVIAEKLPELIEFPKDLVHLEISTKCCFVGKANRLVIIQIQLKYLAEEMQAISKGLEKVVQELANSENDGSVSETFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVNTLLNFMRMFVRAHEENCKQLDYEKKKAQKEAAEKEKLKIGNPKNESGILMKTPT 1406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11572988 11582382 - Carg10761-RA Car01g01277 142141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01277 1406 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Car01g01277 1406 MobiDBLite consensus disorder prediction 692 711 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 572 586 - -
Car01g01277 1406 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Car01g01277 1406 MobiDBLite consensus disorder prediction 870 885 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 740 759 - -
Car01g01277 1406 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Car01g01277 1406 Gene3D Formin, FH2 domain 974 1397 IPR042201 -
Car01g01277 1406 MobiDBLite consensus disorder prediction 565 586 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 602 643 - -
Car01g01277 1406 Coils Coil 1362 1389 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 921 935 - -
Car01g01277 1406 SMART it6_source 471 1406 IPR015425 -
Car01g01277 1406 MobiDBLite consensus disorder prediction 768 788 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 738 945 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 895 920 - -
Car01g01277 1406 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1031 1388 - -
Car01g01277 1406 Pfam Formin Homology 2 Domain 959 1361 IPR015425 -
Car01g01277 1406 ProSiteProfiles Formin homology-2 (FH2) domain profile. 955 1387 IPR015425 -
Car01g01277 1406 PANTHER FORMIN-J 1 1397 - -
Car01g01277 1406 Gene3D Protein tyrosine phosphatase superfamily 15 201 IPR029021 -
Car01g01277 1406 MobiDBLite consensus disorder prediction 1009 1025 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 1383 1406 - -
Car01g01277 1406 SMART PTEN_C2_2 197 337 IPR014020 -
Car01g01277 1406 MobiDBLite consensus disorder prediction 1009 1031 - -
Car01g01277 1406 Gene3D - 202 341 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 824 861 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 799 813 - -
Car01g01277 1406 MobiDBLite consensus disorder prediction 483 509 - -
Car01g01277 1406 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Car01g01277 1406 MobiDBLite consensus disorder prediction 483 504 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01277 Car09g00362 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00745 Car-Chr1:4513928 Car01g01277 Car-Chr1:11572988 3.76E-132 dispersed
Car01g01277 Car-Chr1:11572988 Car02g01412 Car-Chr2:9268644 4.80E-154 dispersed
Car01g01277 Car-Chr1:11572988 Car10g00436 Car-Chr10:2176912 1.40E-180 wgd
Car01g01277 Car-Chr1:11572988 Car02g00851 Car-Chr2:6133121 0 wgd
Car01g01277 Car-Chr1:11572988 Car09g00362 Car-Chr9:1972665 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01277 - - csv:101214019 1795.79