Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01279 ATGTCGGACGAGGAGCACCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAGGCTGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTCGTCGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTGACTGACAATGGTAACACCAAGGATGATTTGAGGCTCCCAACTGATGATAACCTGCTCTCTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGGCCGAAGAACTAG 483 48.03 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11589971 11592268 + Carg10759-RA Car01g01279 142143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01279 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Car01g01279 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Car01g01279 160 CDD S1_eIF5A 86 156 - -
Car01g01279 160 Gene3D - 86 159 IPR012340 -
Car01g01279 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car01g01279 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car01g01279 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car01g01279 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car01g01279 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car01g01279 160 MobiDBLite consensus disorder prediction 1 21 - -
Car01g01279 160 Gene3D - 1 85 IPR014722 -
Car01g01279 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Car01g01279 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01279 Car09g00361 CCT
Car01g01279 Car05g00295 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01279 Car-Chr1:11589971 Car04g01724 Car-Chr4:9880848 8.42E-107 dispersed
Car01g01279 Car-Chr1:11589971 Car10g00432 Car-Chr10:2154764 2.98E-62 wgd
Car01g01279 Car-Chr1:11589971 Car02g00855 Car-Chr2:6161130 4.15E-112 wgd
Car01g01279 Car-Chr1:11589971 Car05g00295 Car-Chr5:1630760 1.18E-109 wgd
Car01g01279 Car-Chr1:11589971 Car09g00361 Car-Chr9:1964282 1.09E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01279 K03263 K02180 fve:101296375 323.939