Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car01g01279 | ATGTCGGACGAGGAGCACCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAGGCTGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTCGTCGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTGACTGACAATGGTAACACCAAGGATGATTTGAGGCTCCCAACTGATGATAACCTGCTCTCTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGGCCGAAGAACTAG | 483 | 48.03 | MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11589971 | 11592268 | + | Carg10759-RA | Car01g01279 | 142143 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car01g01279 | 160 | PANTHER | BNAA07G09420D PROTEIN | 1 | 156 | - | - | |
Car01g01279 | 160 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 156 | IPR012340 | - | |
Car01g01279 | 160 | CDD | S1_eIF5A | 86 | 156 | - | - | |
Car01g01279 | 160 | Gene3D | - | 86 | 159 | IPR012340 | - | |
Car01g01279 | 160 | SMART | eIF_5a_2 | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Car01g01279 | 160 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 153 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Car01g01279 | 160 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Car01g01279 | 160 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 156 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Car01g01279 | 160 | PIRSF | Transl_init_eIF5A | 1 | 157 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Car01g01279 | 160 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Car01g01279 | 160 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Car01g01279 | 160 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Car01g01279 | 160 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car01g01279 | Car09g00361 | CCT | |
Car01g01279 | Car05g00295 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car01g01279 | Car-Chr1:11589971 | Car04g01724 | Car-Chr4:9880848 | 8.42E-107 | dispersed | |
Car01g01279 | Car-Chr1:11589971 | Car10g00432 | Car-Chr10:2154764 | 2.98E-62 | wgd | |
Car01g01279 | Car-Chr1:11589971 | Car02g00855 | Car-Chr2:6161130 | 4.15E-112 | wgd | |
Car01g01279 | Car-Chr1:11589971 | Car05g00295 | Car-Chr5:1630760 | 1.18E-109 | wgd | |
Car01g01279 | Car-Chr1:11589971 | Car09g00361 | Car-Chr9:1964282 | 1.09E-118 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car01g01279 | K03263 | K02180 | fve:101296375 | 323.939 |